MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P17

Family name MIR-12475 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P5  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P11  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20c  Sha-Mir-12475-P20d  Sha-Mir-12475-P21  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P27c  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL867762.1: 5022-5082 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12475-P17)		 Mir-12475-P17 GL867762.1: 5022-5082 [+] UCSC Ensembl
Mir-12475-P18 GL867762.1: 6910-6970 [+] UCSC Ensembl
Mir-12475-P19 GL867762.1: 9239-9299 [+] UCSC Ensembl
Mir-12475-P20c GL867762.1: 13085-13145 [+] UCSC Ensembl
Mir-12475-P20b GL867762.1: 27481-27541 [+] UCSC Ensembl
Seed CAAUGUG
Precursor
(pre-Mir +30nt flank)		 
AGACUGCAUUUUGAUCGGCUAAUGUCCCACUCGGCACUCUGAAGCCACAUGGUUUGUAUUAUUCAUUUAACAAUGUGUCUCAGAGUGUAGUGGGCCCUUAGCUCCCACAUCAUCUUCCCUG
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Structure
        10          20        30        40        50        60 
AGACUGCAUUUUGAUCG--|    UGU      CG         A C     G  UUGUAUU 
                   GCUAA   CCCACU  GCACUCUGA G CACAU GU       A
                   CGAUU   GGGUGA  UGUGAGACU C GUGUA CA       U
GUCCCUUCUACUACACCCU^    CCC      --         - U     A  AUUUACU 
 .       110       100        90          80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-12475-P17_5p*
mirBase accessionNone
Sequence 
0- UCGGCACUCUGAAGCCACAUGGU -23
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Mature sequence

Sha-Mir-12475-P17_3p
mirBase accessionNone
Sequence 
39- ACAAUGUGUCUCAGAGUGUAGU -61
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