Mir-12475-P9

MirGeneDB ID

Sha-Mir-12475-P9

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-12475-P1 Sha-Mir-12475-P2a Sha-Mir-12475-P2b Sha-Mir-12475-P3 Sha-Mir-12475-P4 Sha-Mir-12475-P5 Sha-Mir-12475-P6 Sha-Mir-12475-P7 Sha-Mir-12475-P8 Sha-Mir-12475-P10 Sha-Mir-12475-P11 Sha-Mir-12475-P12 Sha-Mir-12475-P13 Sha-Mir-12475-P14 Sha-Mir-12475-P15 Sha-Mir-12475-P16 Sha-Mir-12475-P17 Sha-Mir-12475-P18 Sha-Mir-12475-P19 Sha-Mir-12475-P20a Sha-Mir-12475-P20b Sha-Mir-12475-P20c Sha-Mir-12475-P20d Sha-Mir-12475-P21 Sha-Mir-12475-P22 Sha-Mir-12475-P23 Sha-Mir-12475-P24 Sha-Mir-12475-P25 Sha-Mir-12475-P26 Sha-Mir-12475-P27a1 Sha-Mir-12475-P27a2 Sha-Mir-12475-P27b Sha-Mir-12475-P27c Sha-Mir-12475-P28 Sha-Mir-12475-P29 Sha-Mir-12475-P30

Orthologues

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Australidelphia

Genome context
(DEVIL_add)

GL867758.1: 1832-1891 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12475-P9)

Mir-12475-P8 GL867758.1: 569-628 [-] UCSC Ensembl
Mir-12475-P9 GL867758.1: 1832-1891 [-] UCSC Ensembl
Mir-12475-P10 GL867758.1: 5377-5437 [-] UCSC Ensembl
Mir-12475-P11 GL867758.1: 7992-8052 [-] UCSC Ensembl
Mir-12475-P12 GL867758.1: 13885-13946 [-] UCSC Ensembl
Mir-12475-P13 GL867758.1: 15164-15224 [-] UCSC Ensembl
Mir-12475-P14 GL867758.1: 17681-17741 [-] UCSC Ensembl
Mir-12475-P15 GL867758.1: 21633-21692 [-] UCSC Ensembl
Mir-12475-P16 GL867758.1: 22924-22983 [-] UCSC Ensembl

Seed

AAACGCU

Precursor
(pre-Mir +30nt flank)

AGGCUGCAUUUUGAGCUGCUGAAGUCCCACUAAACGCUCUGGAGCCACAUUGUUUGUAUUAUUAUUGAACAAUGUGUUUCAGAGUGUAGUGGGCCUUUGGCCCUCACAUCAUCUUCCCUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
AGGCUGCAUUUUGAGCU--| UG   U      AA            C        UGUAUU 
                   GC  AAG CCCACU  ACGCUCUGGAGC ACAUUGUU      \
                   CG  UUC GGGUGA  UGUGAGACUUUG UGUAACAA      A
GUCCCUUCUACUACACUCC^ GU   C      --            -        GUUAUU 
.       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-12475-P9_5p

mirBase accession

None

Sequence

0- UAAACGCUCUGGAGCCACAUUGUU -24

Get sequence

Star sequence

Sha-Mir-12475-P9_3p*

mirBase accession

None

Sequence

39- CAAUGUGUUUCAGAGUGUAGU -60

Get sequence