MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P11

Family name MIR-12475 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P5  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P17  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20c  Sha-Mir-12475-P20d  Sha-Mir-12475-P21  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P27c  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL867758.1: 7992-8052 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12475-P11)		 Mir-12475-P8 GL867758.1: 569-628 [-] UCSC Ensembl
Mir-12475-P9 GL867758.1: 1832-1891 [-] UCSC Ensembl
Mir-12475-P10 GL867758.1: 5377-5437 [-] UCSC Ensembl
Mir-12475-P11 GL867758.1: 7992-8052 [-] UCSC Ensembl
Mir-12475-P12 GL867758.1: 13885-13946 [-] UCSC Ensembl
Mir-12475-P13 GL867758.1: 15164-15224 [-] UCSC Ensembl
Mir-12475-P14 GL867758.1: 17681-17741 [-] UCSC Ensembl
Mir-12475-P15 GL867758.1: 21633-21692 [-] UCSC Ensembl
Mir-12475-P16 GL867758.1: 22924-22983 [-] UCSC Ensembl
Seed AAGCACU
Precursor
(pre-Mir +30nt flank)		 
GGGCUGCAUUUUGAACUGCUGAAGUCCCACUAAGCACUCUGGAGUCACAUGGUUUGUAUAAUAAUUUGAACAAUGUGUCUCAGAGUGUUGUGGGCCCUUAGCGCCCACAUCAUCUUCCCCG
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Structure
        10          20        30        40        50        60 
GGGCUGCAUUUUGAACU--|    AGU     UA         G  U     G   UGUAUA 
                   GCUGA   CCCAC  AGCACUCUG AG CACAU GUU      A
                   CGAUU   GGGUG  UUGUGAGAC UC GUGUA CAA      U
GCCCCUUCUACUACACCCG^    CCC     --         -  U     A   GUUUAA 
 .       110       100        90           80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12475-P11_5p
mirBase accessionNone
Sequence 
0- UAAGCACUCUGGAGUCACAUGGUU -24
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Star sequence

Sha-Mir-12475-P11_3p*
mirBase accessionNone
Sequence 
40- CAAUGUGUCUCAGAGUGUUGU -61
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