Mir-12475-P23

MirGeneDB ID

Sha-Mir-12475-P23

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-12475-P1 Sha-Mir-12475-P2a Sha-Mir-12475-P2b Sha-Mir-12475-P3 Sha-Mir-12475-P4 Sha-Mir-12475-P5 Sha-Mir-12475-P6 Sha-Mir-12475-P7 Sha-Mir-12475-P8 Sha-Mir-12475-P9 Sha-Mir-12475-P10 Sha-Mir-12475-P11 Sha-Mir-12475-P12 Sha-Mir-12475-P13 Sha-Mir-12475-P14 Sha-Mir-12475-P15 Sha-Mir-12475-P16 Sha-Mir-12475-P17 Sha-Mir-12475-P18 Sha-Mir-12475-P19 Sha-Mir-12475-P20a Sha-Mir-12475-P20b Sha-Mir-12475-P20c Sha-Mir-12475-P20d Sha-Mir-12475-P21 Sha-Mir-12475-P22 Sha-Mir-12475-P24 Sha-Mir-12475-P25 Sha-Mir-12475-P26 Sha-Mir-12475-P27a1 Sha-Mir-12475-P27a2 Sha-Mir-12475-P27b Sha-Mir-12475-P27c Sha-Mir-12475-P28 Sha-Mir-12475-P29 Sha-Mir-12475-P30

Orthologues

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Australidelphia

Genome context
(DEVIL_add)

GL867809.1: 16790-16850 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12475-P23)

Mir-12475-P21 GL867809.1: 8611-8670 [-] UCSC Ensembl
Mir-12475-P22 GL867809.1: 15354-15414 [-] UCSC Ensembl
Mir-12475-P23 GL867809.1: 16790-16850 [-] UCSC Ensembl
Mir-12475-P24 GL867809.1: 18228-18288 [-] UCSC Ensembl
Mir-12475-P25 GL867809.1: 21090-21150 [-] UCSC Ensembl
Mir-12475-P26 GL867809.1: 26679-26739 [-] UCSC Ensembl
Mir-12475-P27a2 GL867809.1: 31494-31554 [-] UCSC Ensembl
Mir-12475-P27b GL867809.1: 33879-33939 [-] UCSC Ensembl
Mir-12475-P29 GL867809.1: 35328-35388 [-] UCSC Ensembl
Mir-12475-P30 GL867809.1: 35804-35864 [-] UCSC Ensembl
Mir-12475-P28 GL867809.1: 37724-37783 [-] UCSC Ensembl

Seed

AGACAUU

Precursor
(pre-Mir +30nt flank)

ACCUGUACUUUUGAGCUGCUGAAGGUCCACUAGACAUUCUGAUACCCCACUGUUUGUAUGACUCUUUGAACAAUGGCUCUCAGAAUGUUGUGGGCCUUUAGCACCCACAACAUCAUCUUCU

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACCUGUACUUUUGAGCU--|            UA          UACC   C   UUGUAUG 
                   GCUGAAGGUCCAC  GACAUUCUGA    CCA UGU       A
                   CGAUUUCCGGGUG  UUGUAAGACU    GGU ACA       C
UCUUCUACUACAACACCCA^            --          CUC-   A   AGUUUCU 
 .       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-12475-P23_5p

mirBase accession

None

Sequence

0- UAGACAUUCUGAUACCCCACUGU -23

Get sequence

Star sequence

Sha-Mir-12475-P23_3p*

mirBase accession

None

Sequence

41- AAUGGCUCUCAGAAUGUUGU -61

Get sequence