MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P21

Family name MIR-12475 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P5  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P11  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P17  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20c  Sha-Mir-12475-P20d  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P27c  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL867809.1: 8611-8670 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12475-P21)		 Mir-12475-P21 GL867809.1: 8611-8670 [-] UCSC Ensembl
Mir-12475-P22 GL867809.1: 15354-15414 [-] UCSC Ensembl
Mir-12475-P23 GL867809.1: 16790-16850 [-] UCSC Ensembl
Mir-12475-P24 GL867809.1: 18228-18288 [-] UCSC Ensembl
Mir-12475-P25 GL867809.1: 21090-21150 [-] UCSC Ensembl
Mir-12475-P26 GL867809.1: 26679-26739 [-] UCSC Ensembl
Mir-12475-P27a2 GL867809.1: 31494-31554 [-] UCSC Ensembl
Mir-12475-P27b GL867809.1: 33879-33939 [-] UCSC Ensembl
Mir-12475-P29 GL867809.1: 35328-35388 [-] UCSC Ensembl
Mir-12475-P30 GL867809.1: 35804-35864 [-] UCSC Ensembl
Mir-12475-P28 GL867809.1: 37724-37783 [-] UCSC Ensembl
Seed UGCAUCC
Precursor
(pre-Mir +30nt flank)		 
GGCUGUAUUUUUGUGCUGCUGAAGUUCCCUAUGCAUCCUGAAAUCCCAUUGUUUGUAUGUUUUUUUCAACAAUGUGUUUCAGAAUGUAGUGGGCCUUUAGCCCUUACAACAUCUUCUUCU
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Structure
        10          20        30        40        50        60
GGCUGUAUUUUUGUGCU--|      UU  CUA     C       CC       UGUAUG 
                   GCUGAAG  CC   UGCAU CUGAAAU  CAUUGUU      U
                   CGAUUUC  GG   AUGUA GACUUUG  GUAACAA      U
UCUUCUUCUACAACAUUCC^      CG  UG-     A       U-       CUUUUU 
.       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12475-P21_5p
mirBase accessionNone
Sequence 
0- AUGCAUCCUGAAAUCCCAUUGUU -23
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Star sequence

Sha-Mir-12475-P21_3p*
mirBase accessionNone
Sequence 
39- CAAUGUGUUUCAGAAUGUAGU -60
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