Mir-12475-P4

MirGeneDB ID

Sha-Mir-12475-P4

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-12475-P1 Sha-Mir-12475-P2a Sha-Mir-12475-P2b Sha-Mir-12475-P3 Sha-Mir-12475-P5 Sha-Mir-12475-P6 Sha-Mir-12475-P7 Sha-Mir-12475-P8 Sha-Mir-12475-P9 Sha-Mir-12475-P10 Sha-Mir-12475-P11 Sha-Mir-12475-P12 Sha-Mir-12475-P13 Sha-Mir-12475-P14 Sha-Mir-12475-P15 Sha-Mir-12475-P16 Sha-Mir-12475-P17 Sha-Mir-12475-P18 Sha-Mir-12475-P19 Sha-Mir-12475-P20a Sha-Mir-12475-P20b Sha-Mir-12475-P20c Sha-Mir-12475-P20d Sha-Mir-12475-P21 Sha-Mir-12475-P22 Sha-Mir-12475-P23 Sha-Mir-12475-P24 Sha-Mir-12475-P25 Sha-Mir-12475-P26 Sha-Mir-12475-P27a1 Sha-Mir-12475-P27a2 Sha-Mir-12475-P27b Sha-Mir-12475-P27c Sha-Mir-12475-P28 Sha-Mir-12475-P29 Sha-Mir-12475-P30

Orthologues

Neu-Mir-12475-o4

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Australidelphia

Genome context
(DEVIL_add)

GL867614.1: 342312-342372 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-12475-P4)

Novel-3 GL867614.1: 335419-335477 [+] UCSC Ensembl
Mir-12475-P1 GL867614.1: 336305-336365 [+] UCSC Ensembl
Mir-12475-P2b GL867614.1: 337187-337247 [+] UCSC Ensembl
Mir-12475-P3 GL867614.1: 338074-338134 [+] UCSC Ensembl
Mir-12475-P2a GL867614.1: 338936-338996 [+] UCSC Ensembl
Mir-12475-P4 GL867614.1: 342312-342372 [+] UCSC Ensembl
Mir-12475-P5 GL867614.1: 345883-345943 [+] UCSC Ensembl
Mir-12475-P6 GL867614.1: 347941-348002 [+] UCSC Ensembl
Mir-12475-P7 GL867614.1: 348904-348964 [+] UCSC Ensembl

Seed

AGGCACU

Precursor
(pre-Mir +30nt flank)

ACACUGCAUUUUGAGCUGCUGAAGUCCCACUAGGCACUCUGAAGCCACAUGGUUUGUAUAAUUUUUUGAACGAUGUGUCUCAGAGUGUUAUGGGCCUUUAGCACCCACAUCAUCUUCCCUG

Get precursor sequence

Structure

        10          20        30        40        50        60 
ACACUGCAUUUUGAGCU--|      U    CUA          A C     G   UGUAUA 
                   GCUGAAG CCCA   GGCACUCUGA G CACAU GUU      A
                   CGAUUUC GGGU   UUGUGAGACU C GUGUA CAA      U
GUCCCUUCUACUACACCCA^      C    A--          - U     G   GUUUUU 
 .       110       100        90          80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-12475-P4_5p

mirBase accession

None

Sequence

0- UAGGCACUCUGAAGCCACAUGGUU -24

Get sequence

Star sequence

Sha-Mir-12475-P4_3p*

mirBase accession

None

Sequence

40- CGAUGUGUCUCAGAGUGUUAU -61

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