MirGeneDB 3.0
MirGeneDB ID

Sha-Novel-3

Family name SHA-NOVEL-3 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)		 GL867614.1: 335419-335477 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Novel-3)		 Novel-3 GL867614.1: 335419-335477 [+] UCSC Ensembl
Mir-12475-P1 GL867614.1: 336305-336365 [+] UCSC Ensembl
Mir-12475-P2b GL867614.1: 337187-337247 [+] UCSC Ensembl
Mir-12475-P3 GL867614.1: 338074-338134 [+] UCSC Ensembl
Mir-12475-P2a GL867614.1: 338936-338996 [+] UCSC Ensembl
Mir-12475-P4 GL867614.1: 342312-342372 [+] UCSC Ensembl
Mir-12475-P5 GL867614.1: 345883-345943 [+] UCSC Ensembl
Mir-12475-P6 GL867614.1: 347941-348002 [+] UCSC Ensembl
Mir-12475-P7 GL867614.1: 348904-348964 [+] UCSC Ensembl
Seed GUCCGGC
Precursor
(pre-Mir +30nt flank)		 
UGGCUGCAUUUUCAACUGCUGAGUUCCCACUGUCCGGCCUGAAGACACAUUGUGUGACCCUUUCAAACUAUGUAUUUUCAGACCUGAGUGGGCCCUUAGUACACACAUCAUCUUCUUCC
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Structure
        10          20        30        40        50          
UGGCUGCAUUUUCAACU--|     UU     UG  C  C       C    U  GUGACC 
                   GCUGAG  CCCAC  UC GG CUGAAGA ACAU GU      \
                   UGAUUC  GGGUG  AG CC GACUUUU UGUA CA      C
CCUUCUUCUACUACACACA^     CC     --  U  A       A    U  AACUUU 
       110       100        90          80        70
Deep sequencing
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CommentDerived for DasyuroDcRNAphia.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-3_5p
mirBase accessionNone
Sequence 
0- UGUCCGGCCUGAAGACACAUUGU -23
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Co-mature sequence

Sha-Novel-3_3p
mirBase accessionNone
Sequence 
38- UAUGUAUUUUCAGACCUGAGU -59
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