MirGeneDB 2.1

MirGeneDB ID

Sha-Novel-3

Family name MAR-NOVEL-3 (all species)
Seed UUUCUCC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Mdo-Novel-3 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL849664.1: 204167-204223 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAGAAGUCGAAUAGAUAGCAGUGGGGUCAUUUCUCCCCUUCGAGCUCAGGGGGUAGAAUAGCACCUGAACUGUGGAGAGAAAAGACUCCUAUGUUGCCUUUCAACAUUCAUCAUU
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Structure
        10          20        30        40        50         
UGAAGAAGUCGAAUAGA--|    GU      A      C  UU G  C     GGGUAG 
                   UAGCA  GGGGUC UUUCUC CC  C AG UCAGG      \
                   GUUGU  CCUCAG AAAGAG GG  G UC AGUCC      A
UUACUACUUACAACUUUCC^    AU      A      A  U- -  A     ACGAUA 
     110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-3_5p

mirBase accessionNone
Sequence
0- AUUUCUCCCCUUCGAGCUCAGG -22
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Star sequence

Sha-Novel-3_3p*

mirBase accessionNone
Sequence
37- UGAACUGUGGAGAGAAAAGA -57
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