MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P5

Family name MIR-12475 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P11  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P17  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20c  Sha-Mir-12475-P20d  Sha-Mir-12475-P21  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P27c  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL867614.1: 345883-345943 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12475-P5)		 Novel-3 GL867614.1: 335419-335477 [+] UCSC Ensembl
Mir-12475-P1 GL867614.1: 336305-336365 [+] UCSC Ensembl
Mir-12475-P2b GL867614.1: 337187-337247 [+] UCSC Ensembl
Mir-12475-P3 GL867614.1: 338074-338134 [+] UCSC Ensembl
Mir-12475-P2a GL867614.1: 338936-338996 [+] UCSC Ensembl
Mir-12475-P4 GL867614.1: 342312-342372 [+] UCSC Ensembl
Mir-12475-P5 GL867614.1: 345883-345943 [+] UCSC Ensembl
Mir-12475-P6 GL867614.1: 347941-348002 [+] UCSC Ensembl
Mir-12475-P7 GL867614.1: 348904-348964 [+] UCSC Ensembl
Seed AAACACU
Precursor
(pre-Mir +30nt flank)		 
AGGCUGCGUUUUGAGCUGCUGAAGUCCCACUAAACACUCCGAAGCCACAGUGUUUGUAUUAUCAAUUGAACAAUGUGUCUCAGAGUGUAGUGGGCCCUUAGCCCUCACAUCAUCUUCCCUG
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Structure
        10          20        30        40        50        60 
AGGCUGCGUUUUGAGCU--|    AGU      AA      C  A C    G    UGUAUU 
                   GCUGA   CCCACU  ACACUC GA G CACA UGUU      A
                   CGAUU   GGGUGA  UGUGAG CU C GUGU ACAA      U
GUCCCUUCUACUACACUCC^    CCC      --      A  - U    A    GUUAAC 
 .       110       100        90          80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12475-P5_5p
mirBase accessionNone
Sequence 
0- UAAACACUCCGAAGCCACAGUGUU -24
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Star sequence

Sha-Mir-12475-P5_3p*
mirBase accessionNone
Sequence 
40- CAAUGUGUCUCAGAGUGUAGU -61
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