MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-12475-P20c

Family name MIR-12475 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-12475-P1  Sha-Mir-12475-P2a  Sha-Mir-12475-P2b  Sha-Mir-12475-P3  Sha-Mir-12475-P4  Sha-Mir-12475-P5  Sha-Mir-12475-P6  Sha-Mir-12475-P7  Sha-Mir-12475-P8  Sha-Mir-12475-P9  Sha-Mir-12475-P10  Sha-Mir-12475-P11  Sha-Mir-12475-P12  Sha-Mir-12475-P13  Sha-Mir-12475-P14  Sha-Mir-12475-P15  Sha-Mir-12475-P16  Sha-Mir-12475-P17  Sha-Mir-12475-P18  Sha-Mir-12475-P19  Sha-Mir-12475-P20a  Sha-Mir-12475-P20b  Sha-Mir-12475-P20d  Sha-Mir-12475-P21  Sha-Mir-12475-P22  Sha-Mir-12475-P23  Sha-Mir-12475-P24  Sha-Mir-12475-P25  Sha-Mir-12475-P26  Sha-Mir-12475-P27a1  Sha-Mir-12475-P27a2  Sha-Mir-12475-P27b  Sha-Mir-12475-P27c  Sha-Mir-12475-P28  Sha-Mir-12475-P29  Sha-Mir-12475-P30 
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) Australidelphia
Genome context
(DEVIL_add)		 GL867762.1: 13085-13145 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-12475-P20c)		 Mir-12475-P17 GL867762.1: 5022-5082 [+] UCSC Ensembl
Mir-12475-P18 GL867762.1: 6910-6970 [+] UCSC Ensembl
Mir-12475-P19 GL867762.1: 9239-9299 [+] UCSC Ensembl
Mir-12475-P20c GL867762.1: 13085-13145 [+] UCSC Ensembl
Mir-12475-P20b GL867762.1: 27481-27541 [+] UCSC Ensembl
Seed AGACAUU
Precursor
(pre-Mir +30nt flank)		 
GGCUGUAUUUUUAAGCUGCUGAAGGUCCACUAGACAUUCUGAUACUCCAUUGUUUGUAUGACUCCUUGAACAAUGUGGUUCAGAAUGUUGUGGGCCUUUAGUACCCACAACAUAAUCAUCU
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Structure
        10          20        30        40        50        60 
GGCUGUAUUUUUAAGCU--|            UA          U  UC       UGUAUG 
                   GCUGAAGGUCCAC  GACAUUCUGA AC  CAUUGUU      A
                   UGAUUUCCGGGUG  UUGUAAGACU UG  GUAACAA      C
UCUACUAAUACAACACCCA^            --          -  GU       GUUCCU 
 .       110       100        90          80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-12475-P20c_5p
mirBase accessionNone
Sequence 
0- UAGACAUUCUGAUACUCCAUUGUU -24
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Star sequence

Sha-Mir-12475-P20c_3p*
mirBase accessionNone
Sequence 
40- CAAUGUGGUUCAGAAUGUUGU -61
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