Mir-430-o21

MirGeneDB ID

Sha-Mir-430-o21

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o10 Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o15 Sha-Mir-430-o16 Sha-Mir-430-o17 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P1 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Hsa-Mir-430-P21 Mml-Mir-430-P21 Pab-Mir-430-P21

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL850554.1: 15527-15586 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o21)

Mir-430-o24 GL850554.1: 7215-7274 [+] UCSC Ensembl
Mir-430-o25 GL850554.1: 7366-7425 [+] UCSC Ensembl
Mir-430-o29 GL850554.1: 7912-7971 [+] UCSC Ensembl
Mir-430-o10 GL850554.1: 8373-8431 [+] UCSC Ensembl
Mir-430-o11 GL850554.1: 9301-9361 [+] UCSC Ensembl
Mir-430-o12 GL850554.1: 9594-9645 [+] UCSC Ensembl
Mir-430-o13 GL850554.1: 10072-10130 [+] UCSC Ensembl
Mir-430-o14 GL850554.1: 10797-10856 [+] UCSC Ensembl
Mir-430-o15 GL850554.1: 11170-11227 [+] UCSC Ensembl
Mir-430-o16 GL850554.1: 11719-11778 [+] UCSC Ensembl
Mir-430-o17 GL850554.1: 13105-13161 [+] UCSC Ensembl
Mir-430-o18 GL850554.1: 14118-14177 [+] UCSC Ensembl
Mir-430-o19 GL850554.1: 14478-14536 [+] UCSC Ensembl
Mir-430-o20 GL850554.1: 15192-15251 [+] UCSC Ensembl
Mir-430-o21 GL850554.1: 15527-15586 [+] UCSC Ensembl

Seed

AAGUACU

Precursor
(pre-Mir +30nt flank)

GCAAUUGUCAGGACAGCCCAGCCUUGGCACAUUCUAACUGGGAGCACUUAUUGGAUAUGUAAGAACCAUAAGUACUCUCUGUUAGGAUGAGCCUGGCUGAGGAUCGAGCUCCUCUUAAGA

Get precursor sequence

Structure

        10           20        30        40        50         
GCAAUUGUCAGGACAGCC---|    UU   A         U     C      UGGAUAU 
                     CAGCC  GGC CAUUCUAAC GGGAG ACUUAU       G
                     GUCGG  CCG GUAGGAUUG CUCUC UGAAUA       U
AGAAUUCUCCUCGAGCUAGGA^    U-   A         U     A      CCAAGAA 
.       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-430-o21_5p* (predicted)

mirBase accession

None

Sequence

0- AUUCUAACUGGGAGCACUUAUU -22

Get sequence

Mature sequence

Sha-Mir-430-o21_3p

mirBase accession

None

Sequence

38- UAAGUACUCUCUGUUAGGAUGA -60

Get sequence