MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-430-P51

Family name MIR-430 (all species)
Seed AAGUGCU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-430-o10  Sha-Mir-430-o11  Sha-Mir-430-o12  Sha-Mir-430-o13  Sha-Mir-430-o14  Sha-Mir-430-o15  Sha-Mir-430-o16  Sha-Mir-430-o17  Sha-Mir-430-o18  Sha-Mir-430-o19  Sha-Mir-430-o20  Sha-Mir-430-o21  Sha-Mir-430-o22  Sha-Mir-430-o23  Sha-Mir-430-o24  Sha-Mir-430-o25  Sha-Mir-430-o26  Sha-Mir-430-o27  Sha-Mir-430-o29  Sha-Mir-430-P1  Sha-Mir-430-P2  Sha-Mir-430-P3 
Orthologues Mdo-Mir-430-P51 
Node of Origin (locus) Marsupialia
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL849772.1: 42803-42860 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGGUGAACGGCGACCUCAAUUUGUUCCAUCCUUACUAAGGGCACUUUUCAGCCAGCUGAGGGAAAAGUGCUCCUGGUGAGGAAGGAACAGUUUGAGCUCAUCCUGCCGCGGGGGG
Get precursor sequence
Structure
        10          20        30        40        50        
AAGAGGUGAACGGCGAC--|    U       A         A           AGCCA 
                   CUCAA UUGUUCC UCCUUACUA GGGCACUUUUC     G
                   GAGUU GACAAGG AGGAGUGGU CUCGUGAAAAG     C
GGGGGGCGCCGUCCUACUC^    U       A         C           GGAGU 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-430-P51_5p*

mirBase accessionNone
Sequence
0- AUCCUUACUAAGGGCACUUUUC -22
Get sequence
Mature sequence

Sha-Mir-430-P51_3p

mirBase accessionNone
Sequence
36- AAAGUGCUCCUGGUGAGGAAGG -58
Get sequence