MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-430-P51

Family name MIR-430 (all species)
Seed AAAGUGC
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-1643b
Paralogues Mdo-Mir-430-P1  Mdo-Mir-430-P2  Mdo-Mir-430-P3  Mdo-Mir-430-P4  Mdo-Mir-430-P52 
Orthologues Sha-Mir-430-P51 
Node of Origin (locus) Marsupialia
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
4: 400890701-400890759 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-430-P51)
Mir-430-P52 4: 400890413-400890471 [-] UCSC Ensembl
Mir-430-P51 4: 400890701-400890759 [-] UCSC Ensembl
Mir-7303-P2 4: 400890972-400891034 [-] UCSC Ensembl
Mir-1541 4: 400891450-400891510 [-] UCSC Ensembl
Mir-7304 4: 400891594-400891652 [-] UCSC Ensembl
Mir-7303-P1-v1 4: 400892027-400892085 [-] UCSC Ensembl
Mir-7303-P1-v2 4: 400892027-400892085 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGGCCGGCCAAGAAGUCAAAUUUGUUCCAUCCUUACUAAGGGCACUUUUUCUGCCAACUGAGGAAAAAGUGCUGCUAGUGGGGAAGUAACAGUUUGAGCUCCUCUUCUGCCUGGUGG
Get precursor sequence
Structure
        10           20        30        40        50         
CCCGGCCGGCCAAGAAG---|      U   CCA         AG           UGCCA 
                    UCAAAUU GUU   UCCUUACUA  GGCACUUUUUC     \
                    AGUUUGA CAA   AGGGGUGAU  UCGUGAAAAAG     A
GGUGGUCCGUCUUCUCCUCG^      -   UGA         CG           GAGUC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Star sequence

Mdo-Mir-430-P51_5p*

mirBase accessionMIMAT0028598
Sequence
0- AUCCUUACUAAGGGCACUUUUUC -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-1643b-5p
Mature sequence

Mdo-Mir-430-P51_3p

mirBase accessionMIMAT0028599
Sequence
36- AAAAGUGCUGCUAGUGGGGAAGU -59
Get sequence
Proposed targets TargetScanVert: mdo-miR-1643b-3p