MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-7303-P1

Family name MIR-7303 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-7303-P2 
Orthologues Mdo-Mir-7303-P1-v1  Neu-Mir-7303-P1-v1 
Node of Origin (locus) Marsupialia
Node of Origin (family) Marsupialia
Genome context
(DEVIL_add)
GL849772.1: 44547-44605 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-7303-P1-v1)
Mir-430-P51 GL849772.1: 42803-42860 [-] UCSC Ensembl
Mir-7303-P2 GL849772.1: 43147-43201 [-] UCSC Ensembl
Mir-1541 GL849772.1: 43949-44008 [-] UCSC Ensembl
Mir-7304 GL849772.1: 44094-44152 [-] UCSC Ensembl
Mir-7303-P1-v1 GL849772.1: 44547-44605 [-] UCSC Ensembl
Mir-7303-P1-v2 GL849772.1: 44547-44605 [-] UCSC Ensembl
Variant

Sha-Mir-7303-P1-v1

Seed UAUGCGU
Precursor
(pre-Mir +30nt flank)
CUUGGGGAGCAGACGGGGUCCAGCCCAGCUUCAUCCAAACAGGACGCAUUGUCCCAUAUGACCAGGAUAUGCGUCCUCUUUGGAUAUUGUUGGGCGAGAACUGAUCGCAGCAGCGGGGU
Get precursor sequence
Structure
        10          20        30        40        50         
CUUGGGGAGCAGACGGGG--| CA       UUC       C         U   CCAUA 
                    UC  GCCCAGC   AUCCAAA AGGACGCAU GUC     U
                    AG  CGGGUUG   UAGGUUU UCCUGCGUA UAG     G
UGGGGCGACGACGCUAGUCA^ AG       UUA       C         -   GACCA 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7303-P1-v1_5p*

mirBase accessionNone
Sequence
0- UCAUCCAAACAGGACGCAUUGUC -23
Get sequence
Mature sequence

Sha-Mir-7303-P1-v1_3p

mirBase accessionNone
Sequence
36- AUAUGCGUCCUCUUUGGAUAUUG -59
Get sequence
Variant

Sha-Mir-7303-P1-v2

Seed AUGCGUC
Precursor
(pre-Mir +30nt flank)
CUUGGGGAGCAGACGGGGUCCAGCCCAGCUUCAUCCAAACAGGACGCAUUGUCCCAUAUGACCAGGAUAUGCGUCCUCUUUGGAUAUUGUUGGGCGAGAACUGAUCGCAGCAGCGGGGU
Get precursor sequence
Structure
        10          20        30        40        50         
CUUGGGGAGCAGACGGGG--| CA       UUC       C         UGUCCCAUA 
                    UC  GCCCAGC   AUCCAAA AGGACGCAU         \
                    AG  CGGGUUG   UAGGUUU UCCUGCGUA         U
UGGGGCGACGACGCUAGUCA^ AG       UUA       C         UAGGACCAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-7303-P1-v2_5p*

mirBase accessionNone
Sequence
0- UCAUCCAAACAGGACGCAUUGU -22
Get sequence
Mature sequence

Sha-Mir-7303-P1-v2_3p

mirBase accessionNone
Sequence
37- UAUGCGUCCUCUUUGGAUAUUG -59
Get sequence