Mir-1541

MirGeneDB ID

Sha-Mir-1541

Family name

MIR-1541 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Mdo-Mir-1541 Neu-Mir-1541

Node of Origin (locus)

Marsupialia

Node of Origin (family)

Marsupialia

Genome context
(DEVIL_add)

GL849772.1: 43949-44008 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1541)

Mir-430-P51 GL849772.1: 42803-42860 [-] UCSC Ensembl
Mir-7303-P2 GL849772.1: 43147-43201 [-] UCSC Ensembl
Mir-1541 GL849772.1: 43949-44008 [-] UCSC Ensembl
Mir-7304 GL849772.1: 44094-44152 [-] UCSC Ensembl
Mir-7303-P1-v1 GL849772.1: 44547-44605 [-] UCSC Ensembl
Mir-7303-P1-v2 GL849772.1: 44547-44605 [-] UCSC Ensembl

Seed

GGUGUGC

Precursor
(pre-Mir +30nt flank)

GUAUUCUCAACCUAUGACCUUCAACCUGUGACAUCCCAACUGGGCACACUGUUGUGAUGAUGGACAGAUGGUGUGCUUGUUUGGAUGUGGCAGUUUGCAAUGGGACAGACAUCCAGUGAU

Get precursor sequence

Structure

        10        20          30        40        50          
GUAUUCUCAACCUAUGACCUU--|  C    G      C   U            GUGAUG 
                       CAA CUGU ACAUCC AAC GGGCACACUGUU      \
                       GUU GACG UGUAGG UUG UUCGUGUGGUAG      A
UAGUGACCUACAGACAGGGUAAC^  U    G      U   -            ACAGGU 
.       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-1541_5p*

mirBase accession

None

Sequence

0- ACAUCCCAACUGGGCACACUGUU -23

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Mature sequence

Sha-Mir-1541_3p

mirBase accession

None

Sequence

38- UGGUGUGCUUGUUUGGAUGUGG -60

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