MirGeneDB ID | Sha-Mir-430-o11 |
Family name |
MIR-430 (all species) |
Seed |
AAGUGCU |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
|
Paralogues |
Sha-Mir-430-o10
Sha-Mir-430-o12
Sha-Mir-430-o13
Sha-Mir-430-o14
Sha-Mir-430-o15
Sha-Mir-430-o16
Sha-Mir-430-o17
Sha-Mir-430-o18
Sha-Mir-430-o19
Sha-Mir-430-o20
Sha-Mir-430-o21
Sha-Mir-430-o22
Sha-Mir-430-o23
Sha-Mir-430-o24
Sha-Mir-430-o25
Sha-Mir-430-o26
Sha-Mir-430-o27
Sha-Mir-430-o29
Sha-Mir-430-P1
Sha-Mir-430-P2
Sha-Mir-430-P3
Sha-Mir-430-P51
|
Orthologues |
Hsa-Mir-430-P11
Mml-Mir-430-P11a
Mml-Mir-430-P11b
|
Node of Origin (locus) |
S. harrisii
|
Node of Origin (family) |
Vertebrata
|
Genome context (DEVIL_add) |
GL850554.1: 9301-9361 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAGUGGCACAUGACAACCCAACCUUGCACAUCCUAACUUGGAGCACUUAUGCGAUAUGAAAGAAUCAUAAGUGCUCUUUGUGAAGGAUGAGCUAGACUGAGGAUUAAGCUCCUAAAACAA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAGUGGCACAUGACAA- - AC U A A-| UU CGAUAU
CC CA CU GC CAUCCU AC GGAGCACUUAUG G
GG GU GA CG GUAGGA UG UCUCGUGAAUAC A
AACAAAAUCCUCGAAUUA A CA U A AG^ UU UAAGAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Sha-Mir-430-o11_5p* |
mirBase accession | None |
Sequence |
0- AUCCUAACUUGGAGCACUUAUG -22
Get sequence
|
Mature sequence |
Sha-Mir-430-o11_3p |
mirBase accession | None |
Sequence |
38- UAAGUGCUCUUUGUGAAGGAUGA -61
Get sequence
|