Mir-430-o17

MirGeneDB ID

Sha-Mir-430-o17

Family name

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-430-o10 Sha-Mir-430-o11 Sha-Mir-430-o12 Sha-Mir-430-o13 Sha-Mir-430-o14 Sha-Mir-430-o15 Sha-Mir-430-o16 Sha-Mir-430-o18 Sha-Mir-430-o19 Sha-Mir-430-o20 Sha-Mir-430-o21 Sha-Mir-430-o22 Sha-Mir-430-o23 Sha-Mir-430-o24 Sha-Mir-430-o25 Sha-Mir-430-o26 Sha-Mir-430-o27 Sha-Mir-430-o29 Sha-Mir-430-P1 Sha-Mir-430-P2 Sha-Mir-430-P3 Sha-Mir-430-P51

Orthologues

Hsa-Mir-430-P17 Mml-Mir-430-P17 Pab-Mir-430-P17

Node of Origin (locus)

S. harrisii

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL850554.1: 13105-13161 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-o17)

Mir-430-o24 GL850554.1: 7215-7274 [+] UCSC Ensembl
Mir-430-o25 GL850554.1: 7366-7425 [+] UCSC Ensembl
Mir-430-o29 GL850554.1: 7912-7971 [+] UCSC Ensembl
Mir-430-o10 GL850554.1: 8373-8431 [+] UCSC Ensembl
Mir-430-o11 GL850554.1: 9301-9361 [+] UCSC Ensembl
Mir-430-o12 GL850554.1: 9594-9645 [+] UCSC Ensembl
Mir-430-o13 GL850554.1: 10072-10130 [+] UCSC Ensembl
Mir-430-o14 GL850554.1: 10797-10856 [+] UCSC Ensembl
Mir-430-o15 GL850554.1: 11170-11227 [+] UCSC Ensembl
Mir-430-o16 GL850554.1: 11719-11778 [+] UCSC Ensembl
Mir-430-o17 GL850554.1: 13105-13161 [+] UCSC Ensembl
Mir-430-o18 GL850554.1: 14118-14177 [+] UCSC Ensembl
Mir-430-o19 GL850554.1: 14478-14536 [+] UCSC Ensembl
Mir-430-o20 GL850554.1: 15192-15251 [+] UCSC Ensembl
Mir-430-o21 GL850554.1: 15527-15586 [+] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

CCGAGAAGCAGCAACAACCCAGUCUUGCACAUCCUAACUCUGAGUCCUUAUUGGAUAUUUGAAGAUAAGUGCUCUCAGUUGGGAUGAGCCAGGCUGAGGACCAACUAUCCAAAGCUU

Get precursor sequence

Structure

        10          20        30        40        50        
CCGAGAAGCAGCAACAA-  -|     U  A          CU   UC      GGAUA 
                  CC CAGUCU GC CAUCCUAACU  GAG  CUUAUU     \
                  GG GUCGGA CG GUAGGGUUGA  CUC  GAAUAG     U
UUCGAAACCUAUCAACCA  A^     C  A          CU   GU      AAGUU 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-430-o17_5p*

mirBase accession

None

Sequence

0- AUCCUAACUCUGAGUCCUUAUU -22

Get sequence

Mature sequence

Sha-Mir-430-o17_3p

mirBase accession

None

Sequence

35- UAAGUGCUCUCAGUUGGGAUGA -57

Get sequence