Mir-430-P17

MirGeneDB ID

Mml-Mir-430-P17

Family name

MIR-430 (all species)

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-520a

Paralogues

Mml-Mir-430-P1 Mml-Mir-430-P2 Mml-Mir-430-P3 Mml-Mir-430-P4 Mml-Mir-430-P5 Mml-Mir-430-P6 Mml-Mir-430-P7 Mml-Mir-430-P8 Mml-Mir-430-P9 Mml-Mir-430-P10 Mml-Mir-430-P12c Mml-Mir-430-P12d Mml-Mir-430-P12e Mml-Mir-430-P14a Mml-Mir-430-P14b Mml-Mir-430-P15 Mml-Mir-430-P16 Mml-Mir-430-P18 Mml-Mir-430-P20 Mml-Mir-430-P21 Mml-Mir-430-P22 Mml-Mir-430-P24 Mml-Mir-430-P25 Mml-Mir-430-P27a Mml-Mir-430-P27b Mml-Mir-430-P28 Mml-Mir-430-P29a Mml-Mir-430-P29b-v1 Mml-Mir-430-P29c Mml-Mir-430-P30 Mml-Mir-430-P31 Mml-Mir-430-P32a1 Mml-Mir-430-P32a2 Mml-Mir-430-P32b Mml-Mir-430-P33 Mml-Mir-430-P34 Mml-Mir-430-P36a1 Mml-Mir-430-P36a2 Mml-Mir-430-P36b Mml-Mir-430-P36c Mml-Mir-430-P38 Mml-Mir-430-P39 Mml-Mir-430-P42 Mml-Mir-430-P43 Mml-Mir-430-P44 Mml-Mir-430-P45a Mml-Mir-430-P45b

Orthologues

Hsa-Mir-430-P17 Pab-Mir-430-P17 Sha-Mir-430-o17

Node of Origin (locus)

Catarrhini

Node of Origin (family)

Vertebrata

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014354.1: 53449026-53449085 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-430-P17)

Mir-430-P8 CM014354.1: 53429440-53429497 [+] UCSC Ensembl
Mir-430-P9 CM014354.1: 53434346-53434401 [+] UCSC Ensembl
Mir-430-P10 CM014354.1: 53436118-53436177 [+] UCSC Ensembl
Mir-430-P12c CM014354.1: 53440288-53440350 [+] UCSC Ensembl
Mir-430-P12d CM014354.1: 53441222-53441284 [+] UCSC Ensembl
Mir-430-P12e CM014354.1: 53442728-53442790 [+] UCSC Ensembl
Mir-430-P42 CM014354.1: 53444529-53444589 [+] UCSC Ensembl
Mir-430-P16 CM014354.1: 53447415-53447472 [+] UCSC Ensembl
Mir-430-P17 CM014354.1: 53449026-53449085 [+] UCSC Ensembl
Mir-430-P18 CM014354.1: 53453376-53453434 [+] UCSC Ensembl
Mir-430-P15 CM014354.1: 53454188-53454248 [+] UCSC Ensembl
Mir-430-P20 CM014354.1: 53456559-53456619 [+] UCSC Ensembl
Mir-430-P21 CM014354.1: 53457405-53457463 [+] UCSC Ensembl
Mir-430-P22 CM014354.1: 53459381-53459439 [+] UCSC Ensembl
Mir-430-P14a CM014354.1: 53460554-53460614 [+] UCSC Ensembl
Mir-430-P24 CM014354.1: 53462909-53462967 [+] UCSC Ensembl
Mir-430-P14b CM014354.1: 53467690-53467750 [+] UCSC Ensembl
Mir-430-P28 CM014354.1: 53472112-53472171 [+] UCSC Ensembl
Mir-430-P29a CM014354.1: 53474125-53474185 [+] UCSC Ensembl
Mir-430-P30 CM014354.1: 53475275-53475339 [+] UCSC Ensembl
Mir-430-P32a1 CM014354.1: 53480586-53480645 [+] UCSC Ensembl
Mir-430-P29b-v2 CM014354.1: 53481540-53481598 [+] UCSC Ensembl
Mir-430-P29b-v1 CM014354.1: 53481540-53481598 [+] UCSC Ensembl
Mir-430-P36a1 CM014354.1: 53487417-53487475 [+] UCSC Ensembl
Mir-430-P36b CM014354.1: 53490070-53490128 [+] UCSC Ensembl
Mir-430-P36a2 CM014354.1: 53491934-53491992 [+] UCSC Ensembl
Mir-430-P36c CM014354.1: 53494528-53494589 [+] UCSC Ensembl
Mir-430-P43 CM014354.1: 53495743-53495803 [+] UCSC Ensembl

Seed

AAGUGCU

Precursor
(pre-Mir +30nt flank)

GCUGGAGCCAGAAGAUCUCAGGCUGUGACCCUCCAGAGGGAAGUAUUUUCUGUUGUCUGAAGGAAAAGAAAGUGCUUCCCUUUGGACUGUUUCGGUUUGAGAAAAGCAACAUUGCAGUUG

Get precursor sequence

Structure

        10           20        30        40        50         
GCUGGAGCCAGAAGAUC---|       U   CC                    GUUGUCU 
                    UCAGGCUG GAC  UCCAGAGGGAAGUAUUUUCU       \
                    AGUUUGGC UUG  AGGUUUCCCUUCGUGAAAGA       G
GUUGACGUUACAACGAAAAG^       U   UC                    AAAGGAA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-430-P17_5p*

mirBase accession

MIMAT0026896

Sequence

0- CUCCAGAGGGAAGUAUUUUCU -21

Get sequence

Proposed targets

TargetScanVert: mml-miR-520a-5p

Mature sequence

Mml-Mir-430-P17_3p

mirBase accession

MIMAT0006388

Sequence

38- AAAGUGCUUCCCUUUGGACUGU -60

Get sequence

Proposed targets

TargetScanVert: mml-miR-520a-3p