| MirGeneDB ID | Sha-Mir-12473 |
|---|---|
| Family name | MIR-12473 (all species) |
| Species | Tasmanian devil (Sarcophilus harrisii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Mdo-Mir-12473 Neu-Mir-12473 |
| Node of Origin (locus) | S. harrisii |
| Node of Origin (family) | Marsupialia |
| Genome context (DEVIL_add) |
|
| Variant | Sha-Mir-12473-v1 |
| Seed | CACUUGC |
| Precursor (pre-Mir +30nt flank) |
GCACUUGCCAGAUCCUGAGGUUCUUGGUGCCUACUAGAAUAUCAGAGCUGGCAGGAACUCGet precursor sequence |
| Structure | 10 20 30 GCA--| AUC G U G CUUGCCAG CUGA GUUCU GGU C GGACGGUC GACU UAAGA UCA C CUCAA^ GA- A - U . 50 40 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Sha-Mir-12473-v1_5p |
| mirBase accession | None |
| Sequence |
0- GCACUUGCCAGAUCCUGAGGUUCU -24
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|
| Star sequence | Sha-Mir-12473-v1_3p* |
| mirBase accession | None |
| Sequence |
37- AAUAUCAGAGCUGGCAGGAACUC -60
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|
| Variant | Sha-Mir-12473-v2 |
| Seed | ACUUGCC |
| Precursor (pre-Mir +30nt flank) |
CACUUGCCAGAUCCUGAGGUUCUUGGUGCCUACUAGAAUAUCAGAGCUGGCAGGAACUGet precursor sequence |
| Structure | 10 20 CA--| AUC G U G CUUGCCAG CUGA GUUCU GGU C GGACGGUC GACU UAAGA UCA C UCAA^ GA- A - U 50 40 30 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Sha-Mir-12473-v2_5p |
| mirBase accession | None |
| Sequence |
0- CACUUGCCAGAUCCUGAGGUUCU -23
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|
| Co-mature sequence | Sha-Mir-12473-v2_3p |
| mirBase accession | None |
| Sequence |
36- AAUAUCAGAGCUGGCAGGAACU -58
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|
