| MirGeneDB ID | Sha-Novel-1 |
|---|
| Family name |
MAR-NOVEL-1 (all species) |
|---|
| Seed |
UCAACAC |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Mdo-Novel-1
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(DEVIL_add) |
GL841486.1: 154526-154585 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AAAUGGUGAUCAACUCAUGGAUGUUCUGGAAGGGGAACCAGGUGAUUGCGUGCCUAUUGAAGACAGCAUCAACACUUCUUGUUUCUCUCUCCAGAGCAUCGUUCAACGAACAAAAUUUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAUGGUGAUCAACUCAUG- - C--| A C CUAUU
GAUGUUCUGGA AGGGGAAC AGGUG UUG GUGC G
CUACGAGACCU UCUCUUUG UUCAC AAC UACG A
AAUUUAAAACAAGCAACUUG C UUC^ - - ACAGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Although named mir-505 by miRBase this locus is neither similar in sequence nor syntenic with Mir-505 in eutherian mammals and thus is given a different name. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGGAACCAGGUGAUUGCGUGC -23
Get sequence
|
|---|
| Mature sequence |
Sha-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AUCAACACUUCUUGUUUCUCUCU -60
Get sequence
|
|---|
