Mir-430-P1

MirGeneDB ID

Ete-Mir-430-P1

Family name

MIR-430 (all species)

Seed

AAGUGCU

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-430-P2 Ete-Mir-430-P3 Ete-Mir-430-P4 Ete-Mir-430-P5 Ete-Mir-430-P8

Orthologues

Aca-Mir-430-P1 Ami-Mir-430-P1 Bta-Mir-430-P1 Cfa-Mir-430-P1 Cli-Mir-430-P1 Cmi-Mir-430-P1 Cpi-Mir-430-P1 Cpo-Mir-430-P1 Dno-Mir-430-P1 Dre-Mir-430-o1a Dre-Mir-430-o1b1 Dre-Mir-430-o1b2 Dre-Mir-430-o1b3 Dre-Mir-430-o1b4 Dre-Mir-430-o1b5 Dre-Mir-430-o1b6 Dre-Mir-430-o1b7 Dre-Mir-430-o1b8 Dre-Mir-430-o1c Dre-Mir-430-o1d1 Dre-Mir-430-o1d2 Dre-Mir-430-o1d3 Dre-Mir-430-o1d4 Dre-Mir-430-o1d5 Dre-Mir-430-o1d6 Dre-Mir-430-o1d7 Dre-Mir-430-o1e1 Dre-Mir-430-o1e2 Dre-Mir-430-o1e3 Gga-Mir-430-P1 Hsa-Mir-430-P1 Mdo-Mir-430-P1 Mml-Mir-430-P1 Mmu-Mir-430-P1 Mun-Mir-430-P1 Oan-Mir-430-P1 Ocu-Mir-430-P1 Rno-Mir-430-P1 Sha-Mir-430-P1 Spt-Mir-430-P1 Sto-Mir-430-P1 Tgu-Mir-430-P1 Xla-Mir-430-P1a Xla-Mir-430-P1b Xtr-Mir-430-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(echTel2)

JH980307: 56023427-56023485 [-] UCSC

Precursor
(pre-Mir +30nt flank)

AUCCACUCCCUAGGAAAUGGAUUUCCUUGGACUUUAACAAGGAGGCCCUUUUACUACUUAAAAAAGUAAGUGCUUCCUUGUUUUAGUAAAAGUGAAUUCAGUUUAUCUACGGGUAGACA

Get precursor sequence

Structure

        10          20        30        40        50          
AUCCACUCCCUAGGAAA--|     UC   GG   UU           CCU     UACUU 
                   UGGAUU  CUU  ACU  AACAAGGAGGC   UUUAC     \
                   ACUUAA  GAA  UGA  UUGUUCCUUCG   GAAUG     A
ACAGAUGGGCAUCUAUUUG^     GU   AA   UU           U--     AAAAA 
       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-430-P1_5p* (predicted)

mirBase accession

None

Sequence

0- ACUUUAACAAGGAGGCCCUUUUAC -24

Get sequence

Mature sequence

Ete-Mir-430-P1_3p (predicted)

mirBase accession

None

Sequence

36- UAAGUGCUUCCUUGUUUUAGUAA -59

Get sequence