| MirGeneDB ID | Spt-Mir-92-P1a |
|---|---|
| Family name | MIR-92 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-92-P1c Spt-Mir-92-P1d Spt-Mir-92-P2a Spt-Mir-92-P2c |
| Orthologues | Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Dre-Mir-92-P1a1 Dre-Mir-92-P1a2 Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gmo-Mir-92-P1a1 Gmo-Mir-92-P1a2 Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mal-Mir-92-P1a1 Mal-Mir-92-P1a2 Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Oan-Mir-92-P1a5 Oan-Mir-92-P1a6 Oan-Mir-92-P1a7 Oan-Mir-92-P1a8 Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Sto-Mir-92-P1a Tgu-Mir-92-P1a Tni-Mir-92-P1a1 Tni-Mir-92-P1a2 Xla-Mir-92-P1a3 Xla-Mir-92-P1a4 Xtr-Mir-92-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-92-P1a) |
Mir-17-P1a
QEPC01001394.1: 2547642-2547702 [+]
UCSC
Ensembl
Mir-17-P2a QEPC01001394.1: 2547787-2547851 [+] UCSC Ensembl Mir-19-P1a QEPC01001394.1: 2547937-2547994 [+] UCSC Ensembl Mir-17-P4a QEPC01001394.1: 2548101-2548159 [+] UCSC Ensembl Mir-19-P2a QEPC01001394.1: 2548240-2548300 [+] UCSC Ensembl Mir-92-P1a QEPC01001394.1: 2548356-2548416 [+] UCSC Ensembl |
| Seed | AUUGCAC |
| Precursor (pre-Mir +30nt flank) |
AAGUGAGGAAAGCUAUACCCCUUUCUACACAGGUUGGGAUCAGAUGCAAUGCUGUGUGUGUAUUUCUGGUAUUGCACUUGUCCCGGCCUGUUGAGGUUGGUGGGGCCAGAGGCUGAAAUAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAGUGAGGAAAGCUAUA- -| UU AC C A GUGUGU CC CC UCU ACAGGUUGGGAU AG UGCAAUGCU G GG GG GGA UGUCCGGCCCUG UC ACGUUAUGG U UAUAAAGUCGGAGACCGG U^ UU GU U - UCUUUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Star sequence | Spt-Mir-92-P1a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGUUGGGAUCAGAUGCAAUGCU -23
Get sequence
|
| Mature sequence | Spt-Mir-92-P1a_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- UAUUGCACUUGUCCCGGCCUGU -61
Get sequence
|
