Mir-92-P1a4

MirGeneDB ID

Xla-Mir-92-P1a4

Family name

MIR-92 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-92a-4

Paralogues

Xla-Mir-92-P1a3 Xla-Mir-92-P1c3 Xla-Mir-92-P1c4 Xla-Mir-92-P1d1 Xla-Mir-92-P1d2 Xla-Mir-92-P2a Xla-Mir-92-P2c3 Xla-Mir-92-P2c4 Xla-Mir-92-P2d3 Xla-Mir-92-P2d4

Orthologues

Aca-Mir-92-P1a Ami-Mir-92-P1a Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Bta-Mir-92-P1a Cel-Mir-92 Cfa-Mir-92-P1a Cja-Mir-92-P1a Cli-Mir-92-P1a Cmi-Mir-92-P1a Cpi-Mir-92-P1a Cpo-Mir-92-P1a Dno-Mir-92-P1a Eca-Mir-92-P1a Esc-Mir-92 Ete-Mir-92-P1a Gga-Mir-92-P1a Gja-Mir-92-P1a Gsp-Mir-92 Hmi-Mir-92 Hsa-Mir-92-P1a Isc-Mir-92 Laf-Mir-92-P1a Lch-Mir-92-P1a Loc-Mir-92-P1a Mdo-Mir-92-P1a Mml-Mir-92-P1a Mmr-Mir-92-P1a Mmu-Mir-92-P1a Mun-Mir-92-P1a Obi-Mir-92 Ocu-Mir-92-P1a Pab-Mir-92-P1a Pbv-Mir-92-P1a Rno-Mir-92-P1a Sha-Mir-92-P1a Sme-Mir-92 Spt-Mir-92-P1a Sto-Mir-92-P1a Tgu-Mir-92-P1a Xtr-Mir-92-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 104998709-104998768 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1a4)

Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P4a4 NC_030727.1: 104998958-104999018 [-] UCSC Ensembl
Mir-19-P1a4 NC_030727.1: 104999128-104999185 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl

Seed

AUUGCAC

Precursor
(pre-Mir +30nt flank)

GGCACAUUGGGGACUUGCCCCUUUCUGUAUAGGUUGGGAUUGGUUGCAAUGCUGUCCUAUUUAUGUAGUAUUGCACUUGUCCCGGCCUGUUUAGGAUGGUUGGGAUUUUUAUCCCCCCUC

Get precursor sequence

Structure

        10          20        30        40        50          
GGCACAUUGGGGACUUGCC--| U     U            U   U        GUCCUA 
                     CC UUCUG AUAGGUUGGGAU GGU GCAAUGCU      \
                     GG AGGAU UGUCCGGCCCUG UCA CGUUAUGA      U
CUCCCCCCUAUUUUUAGGGUU^ U     U            U   -        UGUAUU 
.       110       100        90        80         70