Mir-19-P1a4

MirGeneDB ID

Xla-Mir-19-P1a4

Family name

MIR-19 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-19-P1a3 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xla-Mir-19-P2c3 Xla-Mir-19-P2c4

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Tgu-Mir-19-P1a Xtr-Mir-19-P1a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 104999128-104999185 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1a4)

Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P4a4 NC_030727.1: 104998958-104999018 [-] UCSC Ensembl
Mir-19-P1a4 NC_030727.1: 104999128-104999185 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl

Seed

GUUUUGC

Precursor
(pre-Mir +30nt flank)

GCCUGUUGCUACUUUGUGCAGUCUUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAAAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGCAGCCUGUAUUGGCUGCAUUAACAAGC

Get precursor sequence

Structure

        10          20        30        40          50       
GCCUGUUGCUACUUUGU--    U  U                 --|     U  AAGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     A
                   UGUC GA GGUAGUCAAAACGUAUC  AACGUG UG     A
CGAACAAUUACGUCGGUUA    C  C                 UA^     U  AUGUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-19-P1a4_5p

mirBase accession

None

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

Get sequence

Co-mature sequence

Xla-Mir-19-P1a4_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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