MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-19-P1a4

Family name MIR-19 (all species)
Seed GUUUUGC
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-19-P1a3  Xla-Mir-19-P2a3  Xla-Mir-19-P2a4  Xla-Mir-19-P2c3  Xla-Mir-19-P2c4 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Xtr-Mir-19-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 104999128-104999185 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a4)
Mir-92-P1a4 NC_030727.1: 104998709-104998768 [-] UCSC Ensembl
Mir-19-P2a4 NC_030727.1: 104998831-104998891 [-] UCSC Ensembl
Mir-17-P2a4 NC_030727.1: 104999254-104999318 [-] UCSC Ensembl
Mir-17-P1a4 NC_030727.1: 104999384-104999445 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCUGUUGCUACUUUGUGCAGUCUUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAAAAUGUAGUUGUGCAAAUCUAUGCAAAACUGAUGGCAGCCUGUAUUGGCUGCAUUAACAAGC
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Structure
        10          20        30        40          50       
GCCUGUUGCUACUUUGU--    U  U                 --|     U  AAGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     A
                   UGUC GA GGUAGUCAAAACGUAUC  AACGUG UG     A
CGAACAAUUACGUCGGUUA    C  C                 UA^     U  AUGUA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Eg He Re St St St St
Mature sequence

Xla-Mir-19-P1a4_5p

mirBase accessionNone
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Co-mature sequence

Xla-Mir-19-P1a4_3p

mirBase accessionNone
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
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