MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-19-P1a

Family name MIR-19 (all species)
Seed GUGCAAA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-19a
Paralogues Tgu-Mir-19-P2a  Tgu-Mir-19-P2c 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a1  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tni-Mir-19-P1a1  Tni-Mir-19-P1a2  Xla-Mir-19-P1a3  Xla-Mir-19-P1a4  Xtr-Mir-19-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
1: 71703804-71703861 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a)
Mir-17-P1a 1: 71703517-71703577 [+] UCSC Ensembl
Mir-17-P2a 1: 71703664-71703728 [+] UCSC Ensembl
Mir-19-P1a 1: 71703804-71703861 [+] UCSC Ensembl
Mir-17-P4a 1: 71703973-71704031 [+] UCSC Ensembl
Mir-19-P2a 1: 71704107-71704167 [+] UCSC Ensembl
Mir-92-P1a 1: 71704225-71704283 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUCCAGUAUUCUUUGCAGACUUCUGUUAGUUUUGCAUAGUUGCACUACAAGAAGAGAGUGGUUGUGCAAAUCUAUGCAAAGCUGAUGGUGGCCUGUUAUAAUCUACAUCAAGGAC
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Structure
        10          20        30        40          50       
AUGUUCCAGUAUUCUUU--    A  U                 --|     U  AAGAA 
                   GCAG CU CUGUUAGUUUUGCAUAG  UUGCAC AC     G
                   UGUC GG GGUAGUCGAAACGUAUC  AACGUG UG     A
CAGGAACUACAUCUAAUAU    C  U                 UA^     U  GUGAG 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-19-P1a_5p*

mirBase accessionMIMAT0027023
Sequence
0- AGUUUUGCAUAGUUGCACUAC -21
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Mature sequence

Tgu-Mir-19-P1a_3p

mirBase accessionMIMAT0014611
Sequence
35- UGUGCAAAUCUAUGCAAAGCUGA -58
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