MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-19-P1a2

Family name MIR-19 (all species)
Seed GUGCAAA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-19-P1a1  Tni-Mir-19-P2a1  Tni-Mir-19-P2a2  Tni-Mir-19-P2d 
Orthologues Aca-Mir-19-P1a  Ami-Mir-19-P1a  Bta-Mir-19-P1a  Cfa-Mir-19-P1a  Cli-Mir-19-P1a  Cmi-Mir-19-P1a-v1  Cmi-Mir-19-P1a-v2  Cpi-Mir-19-P1a  Cpo-Mir-19-P1a  Dno-Mir-19-P1a  Dre-Mir-19-P1a2  Ete-Mir-19-P1a  Gga-Mir-19-P1a  Gja-Mir-19-P1a  Gmo-Mir-19-P1a2  Hsa-Mir-19-P1a  Lch-Mir-19-P1a  Loc-Mir-19-P1a  Mal-Mir-19-P1a2  Mdo-Mir-19-P1a  Mml-Mir-19-P1a  Mmu-Mir-19-P1a  Mun-Mir-19-P1a  Oan-Mir-19-P1a  Ocu-Mir-19-P1a  Pbv-Mir-19-P1a  Rno-Mir-19-P1a  Sha-Mir-19-P1a  Spt-Mir-19-P1a  Sto-Mir-19-P1a-v1  Sto-Mir-19-P1a-v2  Tgu-Mir-19-P1a  Xtr-Mir-19-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
2: 12892361-12892418 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1a2)
Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCACCUAAACUUUUGACAGUUCUCUGUCAGUUUUGCAUGGUUGCGCUGCAAGAAGAAAUAAGUUGUGCAAAUCUAUGCAAAACUGACAGCGGUCUGAUUUUCCACGCCUGGGUCAC
Get precursor sequence
Structure
        10          20        30        40          50       
GUCCACCUAAACUUUUGA--   UU U                 --|     U  AAGAA 
                    CAG  C CUGUCAGUUUUGCAUGG  UUGCGC GC     G
                    GUC  G GACAGUCAAAACGUAUC  AACGUG UG     A
CACUGGGUCCGCACCUUUUA   UG C                 UA^     U  AAUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-19-P1a2_5p*

mirBase accessionNone
Sequence
0- AGUUUUGCAUGGUUGCGCUGC -21
Get sequence
Mature sequence

Tni-Mir-19-P1a2_3p

mirBase accessionNone
Sequence
35- UGUGCAAAUCUAUGCAAAACUGA -58
Get sequence