Mir-19-P2d

MirGeneDB ID

Tni-Mir-19-P2d

Family name

MIR-19 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

Paralogues

Tni-Mir-19-P1a1 Tni-Mir-19-P1a2 Tni-Mir-19-P2a1 Tni-Mir-19-P2a2

Orthologues

Cmi-Mir-19-P2d Dre-Mir-19-P2d Gmo-Mir-19-P2d Lch-Mir-19-P2d Loc-Mir-19-P2d Mal-Mir-19-P2d Mun-Mir-19-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

1: 5569689-5569755 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2d)

Mir-92-P2d 1: 5569539-5569598 [-] UCSC Ensembl
Mir-19-P2d 1: 5569689-5569755 [-] UCSC Ensembl
Mir-17-P4d 1: 5569901-5569959 [-] UCSC Ensembl
Mir-17-P1d 1: 5570107-5570169 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

CCUGGAGACCAGGAUGGUCUGGGCCUGGUCAGCUUUGCGGGGUCGGCAGUCAGCCUGUGUCUGGAAGGAGCAGCUGUGCAAACCCAUGCAAAGCUGACCACGUCCAGAACUCUCAGCCCCCGCGCAG

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Structure

        10          20        30         40        50        60   
CCUGGAGACCAGGAUGG--       C              -|   CG   GU    CUGUGUCU 
                   UCUGGGC UGGUCAGCUUUGCG GGGU  GCA  CAGC        G
                   AGACCUG ACCAGUCGAAACGU CCCA  CGU  GUCG        G
GACGCGCCCCCGACUCUCA       C              A^   AA   --    ACGAGGAA 
     120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-19-P2d_5p*

mirBase accession

None

Sequence

0- AGCUUUGCGGGGUCGGCAGUCAGC -24

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Mature sequence

Tni-Mir-19-P2d_3p

mirBase accession

None

Sequence

44- UGUGCAAACCCAUGCAAAGCUGA -67

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