Mir-19-P1a2

MirGeneDB ID

Dre-Mir-19-P1a2

Family name

MIR-19 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

Paralogues

Dre-Mir-19-P1a1 Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Dre-Mir-19-P2c Dre-Mir-19-P2d

Orthologues

Aca-Mir-19-P1a Ami-Mir-19-P1a Bta-Mir-19-P1a Cfa-Mir-19-P1a Cja-Mir-19-P1a Cli-Mir-19-P1a Cmi-Mir-19-P1a-v1 Cpi-Mir-19-P1a Cpo-Mir-19-P1a Dno-Mir-19-P1a Eca-Mir-19-P1a Ete-Mir-19-P1a Gga-Mir-19-P1a Gja-Mir-19-P1a Gmo-Mir-19-P1a2 Hsa-Mir-19-P1a Laf-Mir-19-P1a Lch-Mir-19-P1a Loc-Mir-19-P1a Mal-Mir-19-P1a2 Mdo-Mir-19-P1a Mml-Mir-19-P1a Mmr-Mir-19-P1a Mmu-Mir-19-P1a Mun-Mir-19-P1a Neu-Mir-19-P1a Oan-Mir-19-P1a Ocu-Mir-19-P1a Pab-Mir-19-P1a Pbv-Mir-19-P1a Rno-Mir-19-P1a Sha-Mir-19-P1a Spt-Mir-19-P1a Sto-Mir-19-P1a-v1 Tgu-Mir-19-P1a Tni-Mir-19-P1a2 Xtr-Mir-19-P1a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr9: 53436701-53436758 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P1a2)

Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

UUACUCUUUAACUUCAUGCAGUUCUCUGCUAGUUUUGCAUAGUUGCACUACAAGAAAUAUUGAGUUGUGCAAAUCUAUGCAAAACUGAUGGUGGCCUGCUUUUUUCCUGCGCUUCUGG

Get precursor sequence

Structure

        10          20        30        40          50       
UUACUCUUUAACUUCAU--    UU U  GC             --|     U  AAGAA 
                   GCAG  C CU  UAGUUUUGCAUAG  UUGCAC AC     A
                   CGUC  G GG  GUCAAAACGUAUC  AACGUG UG     U
GGUCUUCGCGUCCUUUUUU    CG U  UA             UA^     U  AGUUA 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-19-P1a2_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAUAGUUGCACUAC -21

Get sequence

Mature sequence

Dre-Mir-19-P1a2_3p

mirBase accession

None

Sequence

35- UGUGCAAAUCUAUGCAAAACUGA -58

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