MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-17-P4a2

Family name MIR-17 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID
Paralogues Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Dre-Mir-17-P2a1  Dre-Mir-17-P2a2  Dre-Mir-17-P2c  Dre-Mir-17-P4a1  Dre-Mir-17-P4c  Dre-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a2  Xtr-Mir-17-P4a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr9: 53436542-53436606 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a2)		 Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-19-P2a2 chr9: 53436416-53436475 [-] UCSC Ensembl
Mir-17-P4a2 chr9: 53436542-53436606 [-] UCSC Ensembl
Mir-19-P1a2 chr9: 53436701-53436758 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
CUGUUGAUCUCGCUCUGAUUCCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUGUGAAAAUCCUGAUCUACUGCAAUGUGAGCACUUCAAGUACUUCUAGAUGCUAGCGUCGCUGAGAUUGU
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Structure
        10          20        30         40        50        60  
CUGUUGAUCUCGCUCUGAU--  C  C      A-|          G     G   UUUGUGAA 
                     UC AG AGUAUU  AAGUGCUUAUA UGCAG UAG        \
                     AG UC UCAUGA  UUCACGAGUGU ACGUC AUC        A
UGUUAGAGUCGCUGCGAUCGU  A  U      AC^          A     -   UAGUCCUA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-17-P4a2_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Dre-Mir-17-P4a2_3p*
mirBase accessionNone
Sequence 
42- ACUGCAAUGUGAGCACUUCAAGU -65
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