Mir-17-P4a2

MirGeneDB ID

Dre-Mir-17-P4a2

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Zebrafish (Danio rerio)

MiRBase ID

Paralogues

Dre-Mir-17-P1a1 Dre-Mir-17-P1a2 Dre-Mir-17-P2a1 Dre-Mir-17-P2a2 Dre-Mir-17-P2c Dre-Mir-17-P4a1 Dre-Mir-17-P4c Dre-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Ocu-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a2 Xtr-Mir-17-P4a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr9: 53436542-53436606 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a2)

Mir-92-P1a2 chr9: 53436299-53436355 [-] UCSC Ensembl
Mir-17-P2a2 chr9: 53436841-53436905 [-] UCSC Ensembl
Mir-17-P1a2 chr9: 53436955-53437013 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGUUGAUCUCGCUCUGAUUCCAGCAGUAUUAAAGUGCUUAUAGUGCAGGUAGUUUGUGAAAAUCCUGAUCUACUGCAAUGUGAGCACUUCAAGUACUUCUAGAUGCUAGCGUCGCUGAGAUUGU

Get precursor sequence

Structure

        10          20        30         40        50        60  
CUGUUGAUCUCGCUCUGAU--  C  C      A-|          G     G   UUUGUGAA 
                     UC AG AGUAUU  AAGUGCUUAUA UGCAG UAG        \
                     AG UC UCAUGA  UUCACGAGUGU ACGUC AUC        A
UGUUAGAGUCGCUGCGAUCGU  A  U      AC^          A     -   UAGUCCUA 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-17-P4a2_5p

mirBase accession

None

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Dre-Mir-17-P4a2_3p*

mirBase accession

None

Sequence

42- ACUGCAAUGUGAGCACUUCAAGU -65

Get sequence