Mir-17-P4a

MirGeneDB ID

Eca-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-20a

Paralogues

Eca-Mir-17-P1a Eca-Mir-17-P1c Eca-Mir-17-P1d Eca-Mir-17-P2a Eca-Mir-17-P2c Eca-Mir-17-P4c Eca-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mdo-Mir-17-P4a Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_002863925.1_EquCab3.0)

CM009164.1: 61685496-61685554 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-17-P1a CM009164.1: 61685042-61685103 [+] UCSC Ensembl
Mir-17-P2a CM009164.1: 61685182-61685244 [+] UCSC Ensembl
Mir-19-P1a CM009164.1: 61685331-61685388 [+] UCSC Ensembl
Mir-17-P4a CM009164.1: 61685496-61685554 [+] UCSC Ensembl
Mir-19-P2a CM009164.1: 61685631-61685691 [+] UCSC Ensembl
Mir-92-P1a CM009164.1: 61685748-61685806 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

UGUAUCUGAUGGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCCUCGGCC

Get precursor sequence

Structure

        10            20        30         40        50         
UGUAUCUGAUGGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
CCGGCUCCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Mature sequence

Eca-Mir-17-P4a_5p

mirBase accession

MIMAT0013088

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

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Star sequence

Eca-Mir-17-P4a_3p*

mirBase accession

None

Sequence

36- ACUGCAUUAUGAGCACUUAAAGU -59

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