Mir-17-P4a

MirGeneDB ID

Mdo-Mir-17-P4a

Family name

MIR-17 (all species)

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-20a

Paralogues

Mdo-Mir-17-P1a Mdo-Mir-17-P1c Mdo-Mir-17-P2a Mdo-Mir-17-P2c Mdo-Mir-17-P4c Mdo-Mir-17-P4d

Orthologues

Aca-Mir-17-P4a Ami-Mir-17-P4a Bta-Mir-17-P4a Cfa-Mir-17-P4a Cja-Mir-17-P4a Cli-Mir-17-P4a Cmi-Mir-17-P4a Cpi-Mir-17-P4a Cpo-Mir-17-P4a Dno-Mir-17-P4a Dre-Mir-17-P4a1 Dre-Mir-17-P4a2 Eca-Mir-17-P4a Ete-Mir-17-P4a Gga-Mir-17-P4a Gja-Mir-17-P4a Gmo-Mir-17-P4a1 Gmo-Mir-17-P4a2 Hsa-Mir-17-P4a Laf-Mir-17-P4a Lch-Mir-17-P4a Loc-Mir-17-P4a Mal-Mir-17-P4a1 Mal-Mir-17-P4a2 Mml-Mir-17-P4a Mmr-Mir-17-P4a Mmu-Mir-17-P4a Mun-Mir-17-P4a Neu-Mir-17-P4a Oan-Mir-17-P4a7 Oan-Mir-17-P4a8 Ocu-Mir-17-P4a Pab-Mir-17-P4a Pbv-Mir-17-P4a Rno-Mir-17-P4a Sha-Mir-17-P4a Spt-Mir-17-P4a Sto-Mir-17-P4a Tgu-Mir-17-P4a Tni-Mir-17-P4a1 Tni-Mir-17-P4a2 Xla-Mir-17-P4a3 Xla-Mir-17-P4a4 Xtr-Mir-17-P4a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(monDom5_add)

7: 108468450-108468508 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4a)

Mir-92-P1a 7: 108468200-108468258 [-] UCSC Ensembl
Mir-19-P2a 7: 108468317-108468377 [-] UCSC Ensembl
Mir-17-P4a 7: 108468450-108468508 [-] UCSC Ensembl
Mir-19-P1a 7: 108468619-108468676 [-] UCSC Ensembl
Mir-17-P2a 7: 108468761-108468825 [-] UCSC Ensembl
Mir-17-P1a 7: 108468905-108468965 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUGUAUUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG

Get precursor sequence

Structure

        10            20        30         40        50         
GUGUAUUUGAAAGGACA----|  UUU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
GCUACUUCAACAUCAAGAUGU^  U--    A   AG                 -   UAUUG 
       110       100          90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-17-P4a_5p

mirBase accession

MIMAT0004169

Sequence

0- UAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Proposed targets

TargetScanVert: mdo-miR-20a-5p

Star sequence

Mdo-Mir-17-P4a_3p*

mirBase accession

MIMAT0026707

Sequence

36- ACUGCAUUAUGAGCACUUGAAGU -59

Get sequence

Proposed targets

TargetScanVert: mdo-miR-20a-3p