MirGeneDB 3.0
MirGeneDB ID

Neu-Mir-17-P4a

Family name MIR-17 (all species)
Species Tammar Wallaby (Notamacropus eugenii)
MiRBase ID
Paralogues Neu-Mir-17-P1a  Neu-Mir-17-P1c  Neu-Mir-17-P2a  Neu-Mir-17-P2c  Neu-Mir-17-P4c 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmr-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_028372415.1_mMacEug1.pri)		 CM051818.1: 237302436-237302494 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)		 Mir-17-P4a CM051818.1: 237302436-237302494 [-] UCSC Ensembl
Mir-19-P1a CM051818.1: 237302606-237302663 [-] UCSC Ensembl
Mir-17-P2a CM051818.1: 237302750-237302812 [-] UCSC Ensembl
Mir-17-P1a CM051818.1: 237302892-237302952 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GUGUACUUGAAAGGACAGCUUUUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUGAAGUACUGCUAGCUGUAGAACUACAACUUCAUCG
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Structure
        10            20        30         40        50         
GUGUACUUGAAAGGACA----|  UUU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
GCUACUUCAACAUCAAGAUGU^  U--    A   AG                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Ce Fi Li Mi Mi Mi Mi Mi Ov Se Se Te Te Te
Mature sequence

Neu-Mir-17-P4a_5p
mirBase accessionNone
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Neu-Mir-17-P4a_3p*
mirBase accessionNone
Sequence 
36- ACUGCAUUAUGAGCACUUGAAGU -59
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