MirGeneDB 3.0
MirGeneDB ID

Mmr-Mir-17-P4a

Family name MIR-17 (all species)
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID mmr-mir-20
Paralogues Mmr-Mir-17-P1a  Mmr-Mir-17-P1c  Mmr-Mir-17-P1d  Mmr-Mir-17-P2a  Mmr-Mir-17-P2c  Mmr-Mir-17-P4c  Mmr-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cja-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Eca-Mir-17-P4a  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Hsa-Mir-17-P4a  Laf-Mir-17-P4a  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Neu-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pab-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)		 CM007673.1: 21999828-21999886 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)		 Mir-92-P1a CM007673.1: 21999576-21999634 [-] UCSC Ensembl
Mir-19-P2a CM007673.1: 21999691-21999751 [-] UCSC Ensembl
Mir-17-P4a CM007673.1: 21999828-21999886 [-] UCSC Ensembl
Mir-19-P1a CM007673.1: 21999993-22000050 [-] UCSC Ensembl
Mir-17-P2a CM007673.1: 22000134-22000198 [-] UCSC Ensembl
Mir-17-P1a CM007673.1: 22000277-22000336 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GUGUAUCCGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUCAUGAGCACUUAAAGUACUGCUAGCUGCAGAACUCCAGCUUCGGCC
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Structure
        10         20         30         40        50         
GUGUAUCCGAUGUGACA-  UU  -    C   A-|         A      G   UGUUU 
                  GC  CU GUAG ACU  AAGUGCUUAU GUGCAG UAG     \
                  CG  GA CGUC UGA  UUCACGAGUA UACGUC AUC     A
CCGGCUUCGACCUCAAGA  UC  U    A   AA^         C      -   UAUUG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Mu Mu Mu Mu Mu Mu Mu Mu
Mature sequence

Mmr-Mir-17-P4a_5p
mirBase accessionMIMAT0049196
Sequence 
0- UAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Mmr-Mir-17-P4a_3p*
mirBase accessionNone
Sequence 
36- ACUGCAUCAUGAGCACUUAAAGU -59
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