MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-17-P4a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Human (Homo sapiens)
MiRBase ID hsa-mir-20a
Paralogues Hsa-Mir-17-P1a  Hsa-Mir-17-P1c  Hsa-Mir-17-P1d  Hsa-Mir-17-P2a  Hsa-Mir-17-P2c  Hsa-Mir-17-P4c  Hsa-Mir-17-P4d 
Orthologues Aca-Mir-17-P4a  Ami-Mir-17-P4a  Bta-Mir-17-P4a  Cfa-Mir-17-P4a  Cli-Mir-17-P4a  Cmi-Mir-17-P4a  Cpi-Mir-17-P4a  Cpo-Mir-17-P4a  Dno-Mir-17-P4a  Dre-Mir-17-P4a1  Dre-Mir-17-P4a2  Ete-Mir-17-P4a  Gga-Mir-17-P4a  Gja-Mir-17-P4a  Gmo-Mir-17-P4a1  Gmo-Mir-17-P4a2  Lch-Mir-17-P4a  Loc-Mir-17-P4a  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mdo-Mir-17-P4a  Mml-Mir-17-P4a  Mmu-Mir-17-P4a  Mun-Mir-17-P4a  Oan-Mir-17-P4a7  Oan-Mir-17-P4a8  Ocu-Mir-17-P4a  Pbv-Mir-17-P4a  Rno-Mir-17-P4a  Sha-Mir-17-P4a  Spt-Mir-17-P4a  Sto-Mir-17-P4a  Tgu-Mir-17-P4a  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Xla-Mir-17-P4a3  Xla-Mir-17-P4a4  Xtr-Mir-17-P4a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr13: 91351072-91351130 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4a)
Mir-17-P1a chr13: 91350618-91350677 [+] UCSC Ensembl
Mir-17-P2a chr13: 91350756-91350820 [+] UCSC Ensembl
Mir-19-P1a chr13: 91350904-91350961 [+] UCSC Ensembl
Mir-17-P4a chr13: 91351072-91351130 [+] UCSC Ensembl
Mir-19-P2a chr13: 91351207-91351267 [+] UCSC Ensembl
Mir-92-P1a chr13: 91351324-91351382 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCUAUCUGAUGUGACAGCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGUAGAACUCCAGCUUCGGCC
Get precursor sequence
Structure
        10            20        30         40        50         
GUCUAUCUGAUGUGACA----|  UCU    C   A-                 G   UGUUU 
                     GCU   GUAG ACU  AAGUGCUUAUAGUGCAG UAG     \
                     CGA   CGUC UGA  UUCACGAGUAUUACGUC AUC     A
CCGGCUUCGACCUCAAGAUGU^  U--    A   AA                 -   UAUUG 
       110       100          90        80        70         60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-17-P4a_5p

mirBase accessionMIMAT0000075
Sequence
0- UAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Proposed targets microrna.org: MIMAT0000075
TargetScanVert: hsa-miR-20a-5p
TargetMiner: hsa-miR-20a-5p
miRDB: MIMAT0000075
Star sequence

Hsa-Mir-17-P4a_3p*

mirBase accessionMIMAT0004493
Sequence
36- ACUGCAUUAUGAGCACUUAAAGU -59
Get sequence
Proposed targets microrna.org: MIMAT0004493
TargetScanVert: hsa-miR-20a-3p
TargetMiner: hsa-miR-20a-3p
miRDB: MIMAT0004493