Mir-17-P4c

MirGeneDB ID

Hsa-Mir-17-P4c

Family name

MIR-17 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-20b

Paralogues

Hsa-Mir-17-P1a Hsa-Mir-17-P1c Hsa-Mir-17-P1d Hsa-Mir-17-P2a Hsa-Mir-17-P2c Hsa-Mir-17-P4a Hsa-Mir-17-P4d

Orthologues

Aca-Mir-17-P4c Ami-Mir-17-P4c Bta-Mir-17-P4c Cfa-Mir-17-P4c Cja-Mir-17-P4c Cli-Mir-17-P4c Cmi-Mir-17-P4c Cpi-Mir-17-P4c Cpo-Mir-17-P4c Dno-Mir-17-P4c Dre-Mir-17-P4c Eca-Mir-17-P4c Ete-Mir-17-P4c Gga-Mir-17-P4c Gja-Mir-17-P4c Gmo-Mir-17-P4c Laf-Mir-17-P4c Lch-Mir-17-P4c Loc-Mir-17-P4c Mal-Mir-17-P4c Mdo-Mir-17-P4c Mml-Mir-17-P4c Mmr-Mir-17-P4c Mmu-Mir-17-P4c Neu-Mir-17-P4c Oan-Mir-17-P4c Ocu-Mir-17-P4c Pab-Mir-17-P4c Pbv-Mir-17-P4c Rno-Mir-17-P4c Sha-Mir-17-P4c Spt-Mir-17-P4c Sto-Mir-17-P4c Tgu-Mir-17-P4c Xla-Mir-17-P4c3 Xla-Mir-17-P4c4 Xtr-Mir-17-P4c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chrX: 134169812-134169872 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P4c)

Mir-92-P2c chrX: 134169382-134169446 [-] UCSC Ensembl
Mir-92-P1c chrX: 134169544-134169604 [-] UCSC Ensembl
Mir-19-P2c chrX: 134169683-134169748 [-] UCSC Ensembl
Mir-17-P4c chrX: 134169812-134169872 [-] UCSC Ensembl
Mir-17-P2c chrX: 134170042-134170106 [-] UCSC Ensembl
Mir-17-P1c chrX: 134170208-134170266 [-] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

ACAGAGGAUAAGAUUGGGUCCUAGUAGUACCAAAGUGCUCAUAGUGCAGGUAGUUUUGGCAUGACUCUACUGUAGUAUGGGCACUUCCAGUACUCUUGGAUAACAAAUCUCUUGUUGAUGG

Get precursor sequence

Structure

        10           20        30         40        50          
ACAGAGGAUAAGAUUGG---|   U  U     CA-           G     G   UUUUGG 
                    GUCC AG AGUAC   AAGUGCUCAUA UGCAG UAG      \
                    UAGG UC UCAUG   UUCACGGGUAU AUGUC AUC      C
GGUAGUUGUUCUCUAAACAA^   U  -     ACC           G     -   UCAGUA 
 .       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-17-P4c_5p

mirBase accession

MIMAT0001413

Sequence

0- CAAAGUGCUCAUAGUGCAGGUAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0001413
TargetScanVert: hsa-miR-20b-5p
TargetMiner: hsa-miR-20b-5p
miRDB: MIMAT0001413

Star sequence

Hsa-Mir-17-P4c_3p*

mirBase accession

MIMAT0004752

Sequence

38- ACUGUAGUAUGGGCACUUCCAGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0004752
TargetScanVert: hsa-miR-20b-3p
TargetMiner: hsa-miR-20b-3p
miRDB: MIMAT0004752