MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-17-P4c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-20b
Paralogues Aca-Mir-17-P1a  Aca-Mir-17-P1c  Aca-Mir-17-P2a  Aca-Mir-17-P2c  Aca-Mir-17-P4a 
Orthologues Ami-Mir-17-P4c  Bta-Mir-17-P4c  Cfa-Mir-17-P4c  Cli-Mir-17-P4c  Cmi-Mir-17-P4c  Cpi-Mir-17-P4c  Cpo-Mir-17-P4c  Dno-Mir-17-P4c  Dre-Mir-17-P4c  Ete-Mir-17-P4c  Gga-Mir-17-P4c  Gja-Mir-17-P4c  Gmo-Mir-17-P4c  Hsa-Mir-17-P4c  Lch-Mir-17-P4c  Loc-Mir-17-P4c  Mal-Mir-17-P4c  Mdo-Mir-17-P4c  Mml-Mir-17-P4c  Mmu-Mir-17-P4c  Oan-Mir-17-P4c  Ocu-Mir-17-P4c  Pbv-Mir-17-P4c  Rno-Mir-17-P4c  Sha-Mir-17-P4c  Spt-Mir-17-P4c  Sto-Mir-17-P4c  Tgu-Mir-17-P4c  Xla-Mir-17-P4c3  Xla-Mir-17-P4c4  Xtr-Mir-17-P4c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL344214.1: 24042-24104 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P4c)
Mir-17-P2c GL344214.1: 22479-22543 [+] UCSC Ensembl
Mir-17-P4c GL344214.1: 24042-24104 [+] UCSC Ensembl
Mir-92-P1c GL344214.1: 24446-24508 [+] UCSC Ensembl
Mir-92-P2c GL344214.1: 24606-24670 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUCGUCGAGAUCCCUAUCCUCGCAGUGUCAAAGUGCUCAUAGUGCAGGUAGUUAAUGCACCCAAAUCUACUGUAAUGUGGGCACUUACAGUACUGCCGGAUCCAGAGCAUCCUAUUUGGCG
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Structure
        10           20        30         40        50        60 
UCCUCGUCGAGAUCCCU---|   UC      UCA-           G     G   UUAAUGC 
                    AUCC  GCAGUG    AAGUGCUCAUA UGCAG UAG       \
                    UAGG  CGUCAU    UUCACGGGUGU AUGUC AUC       A
GCGGUUUAUCCUACGAGACC^   C-      GACA           A     -   UAAACCC 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-17-P4c_5p

mirBase accessionMIMAT0021863
Sequence
0- CAAAGUGCUCAUAGUGCAGGUAG -23
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Star sequence

Aca-Mir-17-P4c_3p*

mirBase accessionMIMAT0021864
Sequence
40- ACUGUAAUGUGGGCACUUACAGU -63
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