MirGeneDB 2.1
MirGeneDB ID

Aca-Mir-17-P1c

Family name MIR-17 (all species)
Seed AAAGUGC
Species Green anole lizard (Anolis carolinensis)
MiRBase ID
Paralogues Aca-Mir-17-P1a  Aca-Mir-17-P2a  Aca-Mir-17-P2c  Aca-Mir-17-P4a  Aca-Mir-17-P4c 
Orthologues Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 GL344214.1: 22328-22385 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-17-P2c GL344214.1: 22479-22543 [+] UCSC Ensembl
Mir-17-P4c GL344214.1: 24042-24104 [+] UCSC Ensembl
Mir-92-P1c GL344214.1: 24446-24508 [+] UCSC Ensembl
Mir-92-P2c GL344214.1: 24606-24670 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCUUCUGGGGGGAAAGCCAUCGGGGUGCAAAAGUGCUUAUAGUGCAGGUAGUGUGUUGGCAUCUACUGCAGUGUUGGCACUUCCGUGCCACGAUGGCGAUGCGCGUCAGGUGCAAC
Get precursor sequence
Structure
        10          20        30        40        50         
GUGCUUCUGGGGGGAAA--|      G  UG AA       U   G     G   UGUGU 
                   GCCAUCG GG  C  AAGUGCU AUA UGCAG UAG     \
                   CGGUAGC CC  G  UUCACGG UGU ACGUC AUC     U
CAACGUGGACUGCGCGUAG^      A  GU CC       U   G     -   UACGG 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sk To Wh
Mature sequence

Aca-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUAUAGUGCAGGUAG -23
Get sequence
Star sequence

Aca-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
36- ACUGCAGUGUUGGCACUUCCGU -58
Get sequence