Mir-17-P1c

MirGeneDB ID

Aca-Mir-17-P1c

Family name

MIR-17 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

Paralogues

Aca-Mir-17-P1a Aca-Mir-17-P2a Aca-Mir-17-P2c Aca-Mir-17-P4a Aca-Mir-17-P4c

Orthologues

Ami-Mir-17-P1c Bta-Mir-17-P1c Cfa-Mir-17-P1c Cja-Mir-17-P1c Cli-Mir-17-P1c Cmi-Mir-17-P1c Cpi-Mir-17-P1c Cpo-Mir-17-P1c Dno-Mir-17-P1c Eca-Mir-17-P1c Ete-Mir-17-P1c Gga-Mir-17-P1c Gja-Mir-17-P1c Hsa-Mir-17-P1c Laf-Mir-17-P1c Lch-Mir-17-P1c Loc-Mir-17-P1c Mdo-Mir-17-P1c Mml-Mir-17-P1c Mmr-Mir-17-P1c Mmu-Mir-17-P1c Mun-Mir-17-P1c Neu-Mir-17-P1c Oan-Mir-17-P1c Ocu-Mir-17-P1c Pab-Mir-17-P1c Pbv-Mir-17-P1c Rno-Mir-17-P1c Sha-Mir-17-P1c Spt-Mir-17-P1c Sto-Mir-17-P1c Tgu-Mir-17-P1c Xla-Mir-17-P1c3 Xla-Mir-17-P1c4 Xtr-Mir-17-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL344214.1: 22328-22385 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P1c)

Mir-17-P1c GL344214.1: 22328-22385 [+] UCSC Ensembl
Mir-17-P2c GL344214.1: 22479-22543 [+] UCSC Ensembl
Mir-17-P4c GL344214.1: 24042-24104 [+] UCSC Ensembl
Mir-19-P2c GL344214.1: 24242-24302 [+] UCSC Ensembl
Mir-92-P1c GL344214.1: 24446-24508 [+] UCSC Ensembl
Mir-92-P2c GL344214.1: 24606-24670 [+] UCSC Ensembl

Seed

AAAGUGC

Precursor
(pre-Mir +30nt flank)

GUGCUUCUGGGGGGAAAGCCAUCGGGGUGCAAAAGUGCUUAUAGUGCAGGUAGUGUGUUGGCAUCUACUGCAGUGUUGGCACUUCCGUGCCACGAUGGCGAUGCGCGUCAGGUGCAAC

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Structure

        10          20        30        40        50         
GUGCUUCUGGGGGGAAA--|      G  UG AA       U   G     G   UGUGU 
                   GCCAUCG GG  C  AAGUGCU AUA UGCAG UAG     \
                   CGGUAGC CC  G  UUCACGG UGU ACGUC AUC     U
CAACGUGGACUGCGCGUAG^      A  GU CC       U   G     -   UACGG 
      110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sk	Ta	Ta	To	Wh

Mature sequence

Aca-Mir-17-P1c_5p

mirBase accession

None

Sequence

0- AAAAGUGCUUAUAGUGCAGGUAG -23

Get sequence

Star sequence

Aca-Mir-17-P1c_3p*

mirBase accession

None

Sequence

36- ACUGCAGUGUUGGCACUUCCGU -58

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