MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-17-P1c

Family name MIR-17 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-17-P1a  Loc-Mir-17-P1d  Loc-Mir-17-P2a  Loc-Mir-17-P2c  Loc-Mir-17-P4a  Loc-Mir-17-P4c  Loc-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Sha-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG7: 45791277-45791334 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c LG7: 45788477-45788542 [-] Ensembl
Mir-17-P4c LG7: 45790439-45790497 [-] Ensembl
Mir-17-P2c LG7: 45791034-45791098 [-] Ensembl
Mir-17-P1c LG7: 45791277-45791334 [-] Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
ACCUGGGGCGCGCAGGGCUCAUUGUCGUGCAAAAGUGCUUACAGUGCAGGUAGCCUACACACUCUACUGCAAUGCAAGCACUUCUUGCAUUACCGUGCGGAUUGCUGGCCUGGUUGCU
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Structure
        10          20        30         40        50        
ACCUGGGGCGCGCAGGG-  -   U  C      -|       A  G     G   CCUA 
                  CU CAU GU GUGCAA AAGUGCUU CA UGCAG UAG    C
                  GG GUG CA UACGUU UUCACGAA GU ACGUC AUC    A
UCGUUGGUCCGGUCGUUA  C   C  U      C^       C  A     -   UCAC 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Loc-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
35- ACUGCAAUGCAAGCACUUCUUGC -58
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