MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-17-P1c

Family name MIR-17 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-17-P1a  Sha-Mir-17-P2a  Sha-Mir-17-P2c  Sha-Mir-17-P4a  Sha-Mir-17-P4c  Sha-Mir-17-P4d 
Orthologues Aca-Mir-17-P1c  Ami-Mir-17-P1c  Bta-Mir-17-P1c  Cfa-Mir-17-P1c  Cja-Mir-17-P1c  Cli-Mir-17-P1c  Cmi-Mir-17-P1c  Cpi-Mir-17-P1c  Cpo-Mir-17-P1c  Dno-Mir-17-P1c  Eca-Mir-17-P1c  Ete-Mir-17-P1c  Gga-Mir-17-P1c  Gja-Mir-17-P1c  Hsa-Mir-17-P1c  Laf-Mir-17-P1c  Lch-Mir-17-P1c  Loc-Mir-17-P1c  Mdo-Mir-17-P1c  Mml-Mir-17-P1c  Mmr-Mir-17-P1c  Mmu-Mir-17-P1c  Mun-Mir-17-P1c  Neu-Mir-17-P1c  Oan-Mir-17-P1c  Ocu-Mir-17-P1c  Pab-Mir-17-P1c  Pbv-Mir-17-P1c  Rno-Mir-17-P1c  Spt-Mir-17-P1c  Sto-Mir-17-P1c  Tgu-Mir-17-P1c  Xla-Mir-17-P1c3  Xla-Mir-17-P1c4  Xtr-Mir-17-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL867596.1: 71642-71699 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1c)		 Mir-92-P2c GL867596.1: 70445-70509 [-] UCSC Ensembl
Mir-92-P1c GL867596.1: 70582-70646 [-] UCSC Ensembl
Mir-19-P2c GL867596.1: 71025-71083 [-] UCSC Ensembl
Mir-17-P4c GL867596.1: 71178-71238 [-] UCSC Ensembl
Mir-17-P2c GL867596.1: 71448-71512 [-] UCSC Ensembl
Mir-17-P1c GL867596.1: 71642-71699 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GUUCUGCUGGAGACCGAGCCUUGGUUGUGUAAAAGUGCUUAUAGUGCAGGUAGGUCGGUGUAACUACUGCCCUGUGAGCACUUCCAACAUGACCACGGCAAUGGAUGAUUUGGGGCUU
Get precursor sequence
Structure
        10          20        30         40        50        
GUUCUGCUGGAGACCGA--   U    UG   AA-|           U    G   GUCG 
                   GCC UGGU  UGU   AAGUGCUUAUAG GCAG UAG    G
                   CGG ACCA  ACA   UUCACGAGUGUC CGUC AUC    U
UUCGGGGUUUAGUAGGUAA   C    GU   ACC^           C    -   AAUG 
      110       100        90        80        70         60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P1c_5p
mirBase accessionNone
Sequence 
0- AAAAGUGCUUAUAGUGCAGGUAG -23
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Star sequence

Sha-Mir-17-P1c_3p*
mirBase accessionNone
Sequence 
35- ACUGCCCUGUGAGCACUUCCAAC -58
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