MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-17-P1a

Family name MIR-17 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-17-P1c  Sha-Mir-17-P2a  Sha-Mir-17-P2c  Sha-Mir-17-P4a  Sha-Mir-17-P4c  Sha-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cja-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Eca-Mir-17-P1a  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Laf-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a1  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmr-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Neu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pab-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Tni-Mir-17-P1a2  Xla-Mir-17-P1a3  Xla-Mir-17-P1a4  Xtr-Mir-17-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL849858.1: 3487119-3487179 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a)		 Mir-92-P1a GL849858.1: 3486412-3486470 [-] UCSC Ensembl
Mir-19-P2a GL849858.1: 3486529-3486590 [-] UCSC Ensembl
Mir-17-P4a GL849858.1: 3486664-3486722 [-] UCSC Ensembl
Mir-19-P1a GL849858.1: 3486833-3486890 [-] UCSC Ensembl
Mir-17-P2a GL849858.1: 3486975-3487039 [-] UCSC Ensembl
Mir-17-P1a GL849858.1: 3487119-3487179 [-] UCSC Ensembl
Seed AAAGUGC
Precursor
(pre-Mir +30nt flank)		 
GAUAAAGAUAGUAACCGGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUAGAAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUAGUGACAGCCGCCUCAGGAACAGUA
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Structure
        10          20        30         40        50          
GAUAAAGAUAGUAACCG--    GA       CA-|       A  G     G   UGAUAU 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG      \
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC      G
AUGACAAGGACUCCGCCGA    GA       AUG^       A  G     -   UAAGAU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-17-P1a_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Sha-Mir-17-P1a_3p*
mirBase accessionNone
Sequence 
38- ACUGCAGUGAAGGCACUUGUAGC -61
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