MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-17-P1a1

Family name MIR-17 (all species)
Seed AAAGUGC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-17-P1a2  Mal-Mir-17-P1d  Mal-Mir-17-P2a2a  Mal-Mir-17-P2a2b  Mal-Mir-17-P4a1  Mal-Mir-17-P4a2  Mal-Mir-17-P4c  Mal-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a1  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Tni-Mir-17-P1a1  Xtr-Mir-17-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884692.1: 2411974-2412034 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACUGGGGGACAGUAAUGUCUGUGUAUUGUCAAAGUGCUUACAGUGCAGGUAGUACUGUGUAAUACCUACUGCAGUGAAGGCACUUACAGCAAUACACUGACACUUGGGCAGAUUCUUGGG
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Structure
        10          20        30         40        50          
UACUGGGGGACAGUAAU--   U         CA-|       A  G     G   UACUGU 
                   GUC GUGUAUUGU   AAGUGCUU CA UGCAG UAG      \
                   CAG CACAUAACG   UUCACGGA GU ACGUC AUC      G
GGGUUCUUAGACGGGUUCA   U         ACA^       A  G     -   CAUAAU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-17-P1a1_5p
mirBase accessionNone
Sequence 
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Mal-Mir-17-P1a1_3p*
mirBase accessionNone
Sequence 
38- ACUGCAGUGAAGGCACUUACAGC -61
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