MirGeneDB

MirGeneDB ID

Bta-Mir-17-P1a

Family name MIR-17 (all species)
Seed AAAGUGC
Species Cow (Bos taurus)
MiRBase ID bta-mir-17
Paralogues Bta-Mir-17-P1b  Bta-Mir-17-P1c  Bta-Mir-17-P2a  Bta-Mir-17-P2b  Bta-Mir-17-P3a  Bta-Mir-17-P3b  Bta-Mir-17-P3c 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a1  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Hsa-Mir-17-P1a  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Xtr-Mir-17-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(bosTau8)
chr12: 66226567-66226626 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-17-P1a)
Mir-17-P1a chr12: 66226567-66226626 [+] UCSC Ensembl
Mir-17-P2a chr12: 66226702-66226765 [+] UCSC Ensembl
Mir-19-P1 chr12: 66226849-66226906 [+] UCSC Ensembl
Mir-17-P3a chr12: 66227012-66227070 [+] UCSC Ensembl
Mir-19-P2a chr12: 66227148-66227208 [+] UCSC Ensembl
Mir-92-P1a chr12: 66227265-66227323 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAGAAGAUUGUGACGAGUCAGAAUAAUGUCAAAGUGCUUACAGUGCAGGUAGUGAUAUGUGCAUCUACUGCAGUGAAGGCACUUGUAGCAUUAUGGUGACAGCUGCCUCGGGGCCAAGG
Get precursor sequence
Structure
        10          20        30         40        50         
ACAGAAGAUUGUGACGA--    GA       CA-|       A  G     G   UGAUA 
                   GUCA  AUAAUGU   AAGUGCUU CA UGCAG UAG     U
                   CAGU  UAUUACG   UUCACGGA GU ACGUC AUC     G
GGAACCGGGGCUCCGUCGA    GG       AUG^       A  G     -   UACGU 
.       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-17-P1a_5p

MirBase accessionMIMAT0003815
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Validated targets TargetScanVert: bta-miR-17-5p
Star sequence

Bta-Mir-17-P1a_3p*

MirBase accessionMIMAT0003816
Sequence
37- ACUGCAGUGAAGGCACUUGUAGC -60
Get sequence
Validated targets TargetScanVert: bta-miR-17-3p