MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-17-P1a2

Family name MIR-17 (all species)
Seed AAAGUGC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-17-2
Paralogues Tni-Mir-17-P1a1  Tni-Mir-17-P1d  Tni-Mir-17-P2a1  Tni-Mir-17-P2a2  Tni-Mir-17-P4a1  Tni-Mir-17-P4a2  Tni-Mir-17-P4d 
Orthologues Aca-Mir-17-P1a  Ami-Mir-17-P1a  Bta-Mir-17-P1a  Cfa-Mir-17-P1a  Cli-Mir-17-P1a  Cmi-Mir-17-P1a  Cpi-Mir-17-P1a  Cpo-Mir-17-P1a  Dno-Mir-17-P1a  Dre-Mir-17-P1a2  Ete-Mir-17-P1a  Gga-Mir-17-P1a  Gja-Mir-17-P1a  Gmo-Mir-17-P1a2  Hsa-Mir-17-P1a  Lch-Mir-17-P1a  Loc-Mir-17-P1a  Mal-Mir-17-P1a2  Mdo-Mir-17-P1a  Mml-Mir-17-P1a  Mmu-Mir-17-P1a  Mun-Mir-17-P1a  Oan-Mir-17-P1a  Ocu-Mir-17-P1a  Pbv-Mir-17-P1a  Rno-Mir-17-P1a  Sha-Mir-17-P1a  Spt-Mir-17-P1a  Sto-Mir-17-P1a  Tgu-Mir-17-P1a  Xtr-Mir-17-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
2: 12891981-12892039 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P1a2)
Mir-17-P1a2 2: 12891981-12892039 [+] UCSC Ensembl
Mir-17-P4a2 2: 12892494-12892553 [+] UCSC Ensembl
Mir-92-P1a2 2: 12892725-12892783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCUGACGCUGCUGGAAGUCACCGUAGUGUCAAAGUGCUUACAGUGCAGGUAGUUAAAAGAAAUCUACUGCAGUGAAGGCACUUUCAGCACUAUUCUGAUCAUGAACACACAAGAAUCU
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Structure
        10          20        30         40        50         
CCCUGACGCUGCUGGAA--    CC       C-|        A  G     G   UUAAA 
                   GUCA  GUAGUGU  AAAGUGCUU CA UGCAG UAG     \
                   UAGU  UAUCACG  UUUCACGGA GU ACGUC AUC     A
UCUAAGAACACACAAGUAC    CU       AC^        A  G     -   UAAAG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-17-P1a2_5p

mirBase accessionMIMAT0002917
Sequence
0- CAAAGUGCUUACAGUGCAGGUAG -23
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Star sequence

Tni-Mir-17-P1a2_3p*

mirBase accessionNone
Sequence
36- ACUGCAGUGAAGGCACUUUCAGC -59
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