MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Cow (Bos taurus)
MiRBase ID bta-mir-18b
Paralogues Bta-Mir-17-P1a  Bta-Mir-17-P1c  Bta-Mir-17-P1d  Bta-Mir-17-P2a  Bta-Mir-17-P4a  Bta-Mir-17-P4c  Bta-Mir-17-P4d 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGCUGUUUCCCAGAACGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUCAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAGGCUGCCUGACACACAGCAUUGGAAAA
Get precursor sequence
Structure
        10          20        30          40        50        60 
GAGCUGUUUCCCAGAACGU--  CU         --|  U    C   U     U  UGAAGCA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                     CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAGGUUACGACACACAGUC  UC         CU^  U    A   C     -  UAAGACU 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-17-P2c_5p

mirBase accessionMIMAT0003517
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
Get sequence
Proposed targets TargetScanVert: bta-miR-18b
Star sequence

Bta-Mir-17-P2c_3p*

mirBase accessionNone
Sequence
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
Get sequence