Mir-17-P2c

MirGeneDB ID

Bta-Mir-17-P2c

Family name

MIR-17 (all species)

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-18b

Paralogues

Bta-Mir-17-P1a Bta-Mir-17-P1c Bta-Mir-17-P1d Bta-Mir-17-P2a Bta-Mir-17-P4a Bta-Mir-17-P4c Bta-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Rno-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037357.1: 17976173-17976237 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c NC_037357.1: 17975507-17975571 [-] UCSC Ensembl
Mir-92-P1c NC_037357.1: 17975665-17975725 [-] UCSC Ensembl
Mir-19-P2c NC_037357.1: 17975815-17975876 [-] UCSC Ensembl
Mir-17-P4c NC_037357.1: 17975938-17975998 [-] UCSC Ensembl
Mir-17-P2c NC_037357.1: 17976173-17976237 [-] UCSC Ensembl
Mir-17-P1c NC_037357.1: 17976339-17976397 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GAGCUGUUUCCCAGAACGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAAGCAGCUCAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAGGCUGCCUGACACACAGCAUUGGAAAA

Get precursor sequence

Structure

        10          20        30          40        50        60 
GAGCUGUUUCCCAGAACGU--  CU         --|  U    C   U     U  UGAAGCA 
                     GU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                     CG  GGACACGGU  UCC CGUA AUC CGUCA UC       C
AAAAGGUUACGACACACAGUC  UC         CU^  U    A   C     -  UAAGACU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-17-P2c_5p

mirBase accession

MIMAT0003517

Sequence

0- UAAGGUGCAUCUAGUGCAGUUAG -23

Get sequence

Proposed targets

TargetScanVert: bta-miR-18b

Star sequence

Bta-Mir-17-P2c_3p*

mirBase accession

None

Sequence

40- UACUGCCCUAAAUGCUCCUUCUGGC -65

Get sequence