MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-17-P2c

Family name MIR-17 (all species)
Seed AAGGUGC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues Tgu-Mir-17-P1a  Tgu-Mir-17-P1c  Tgu-Mir-17-P2a  Tgu-Mir-17-P4a  Tgu-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gja-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
4A: 6773715-6773779 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2c)
Mir-17-P1c 4A: 6773566-6773623 [+] UCSC Ensembl
Mir-17-P4c 4A: 6773912-6773972 [+] UCSC Ensembl
Mir-19-P2c 4A: 6774037-6774096 [+] UCSC Ensembl
Mir-92-P1c 4A: 6774233-6774294 [+] UCSC Ensembl
Mir-92-P2c 4A: 6774372-6774436 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAGACCACGCUGCAAAAGGUCCUUGUGUUAAGGUGCAUCUAGUGCAGUUAGUGAUGUAGCGUAGAAUCUACUGCCCUAAAUGCUCCUUCUGGCACAAGCUGCUGCCUGCACAUCCAAAGGAAC
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Structure
        10         20         30          40        50        60 
CUUAGACCACGCUGCAAAA-   C-         --|  U    C   U     U  UGAUGUA 
                    GGU  CUUGUGUUA  AGG GCAU UAG GCAGU AG       G
                    UCG  GAACACGGU  UCC CGUA AUC CGUCA UC       C
CAAGGAAACCUACACGUCCG   UC         CU^  U    A   C     -  UAAGAUG 
   120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-17-P2c_5p

mirBase accessionNone
Sequence
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Tgu-Mir-17-P2c_3p*

mirBase accessionNone
Sequence
40- UACUGCCCUAAAUGCUCCUUCUGGC -65
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