Mir-17-P2c

MirGeneDB ID

Rno-Mir-17-P2c

Family name

MIR-17 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

Paralogues

Rno-Mir-17-P1a Rno-Mir-17-P1c Rno-Mir-17-P1d Rno-Mir-17-P2a Rno-Mir-17-P4a Rno-Mir-17-P4c Rno-Mir-17-P4d

Orthologues

Aca-Mir-17-P2c Ami-Mir-17-P2c Bta-Mir-17-P2c Cfa-Mir-17-P2c Cja-Mir-17-P2c Cli-Mir-17-P2c Cmi-Mir-17-P2c Cpi-Mir-17-P2c Cpo-Mir-17-P2c Dno-Mir-17-P2c Dre-Mir-17-P2c Eca-Mir-17-P2c Ete-Mir-17-P2c Gga-Mir-17-P2c Gja-Mir-17-P2c Gmo-Mir-17-P2c Hsa-Mir-17-P2c Laf-Mir-17-P2c Lch-Mir-17-P2c Loc-Mir-17-P2c Mdo-Mir-17-P2c Mml-Mir-17-P2c Mmr-Mir-17-P2c Mmu-Mir-17-P2c Mun-Mir-17-P2c Neu-Mir-17-P2c Oan-Mir-17-P2c Ocu-Mir-17-P2c Pab-Mir-17-P2c Pbv-Mir-17-P2c Sha-Mir-17-P2c Spt-Mir-17-P2c Sto-Mir-17-P2c Tgu-Mir-17-P2c Xla-Mir-17-P2c3 Xla-Mir-17-P2c4 Xtr-Mir-17-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chrX: 140117734-140117798 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P2c)

Mir-92-P2c chrX: 140117108-140117172 [-] UCSC Ensembl
Mir-92-P1c chrX: 140117265-140117325 [-] UCSC Ensembl
Mir-19-P2c chrX: 140117391-140117456 [-] UCSC Ensembl
Mir-17-P4c chrX: 140117522-140117582 [-] UCSC Ensembl
Mir-17-P2c chrX: 140117734-140117798 [-] UCSC Ensembl
Mir-17-P1c chrX: 140117900-140117958 [-] UCSC Ensembl

Seed

AAGGUGC

Precursor
(pre-Mir +30nt flank)

GAGCUGCUCCUUGUAAUGUGUCUCUUGUGUUAAGGUGCAUCUAGUGCUGUUAGUGAAGCAGCUUAUAAUCUACUGCCCUAAAUGCCCCUUCUCGCACAGGCUACUGCUUACUCCGCAUUUGAAAA

Get precursor sequence

Structure

        10          20        30          40        50        60 
GAGCUGCUCCUUGUAAU-  -  CU       U--|   U    C   U  U  U  UGAAGCA 
                  GU GU  CUUGUGU   AAGG GCAU UAG GC GU AG       G
                  CG CA  GGACACG   UUCC CGUA AUC CG CA UC       C
AAAAGUUUACGCCUCAUU  U  UC       CUC^   C    A   C  U  -  UAAUAUU 
   120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-17-P2c_5p

mirBase accession

None

Sequence

0- UAAGGUGCAUCUAGUGCUGUUAG -23

Get sequence

Star sequence

Rno-Mir-17-P2c_3p*

mirBase accession

None

Sequence

40- UACUGCCCUAAAUGCCCCUUCUCGC -65

Get sequence