MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-17-P2c

Family name MIR-17 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-17-P1a  Gja-Mir-17-P1c  Gja-Mir-17-P2a  Gja-Mir-17-P4a  Gja-Mir-17-P4c 
Orthologues Aca-Mir-17-P2c  Ami-Mir-17-P2c  Bta-Mir-17-P2c  Cfa-Mir-17-P2c  Cja-Mir-17-P2c  Cli-Mir-17-P2c  Cmi-Mir-17-P2c  Cpi-Mir-17-P2c  Cpo-Mir-17-P2c  Dno-Mir-17-P2c  Dre-Mir-17-P2c  Eca-Mir-17-P2c  Ete-Mir-17-P2c  Gga-Mir-17-P2c  Gmo-Mir-17-P2c  Hsa-Mir-17-P2c  Laf-Mir-17-P2c  Lch-Mir-17-P2c  Loc-Mir-17-P2c  Mdo-Mir-17-P2c  Mml-Mir-17-P2c  Mmr-Mir-17-P2c  Mmu-Mir-17-P2c  Mun-Mir-17-P2c  Neu-Mir-17-P2c  Oan-Mir-17-P2c  Ocu-Mir-17-P2c  Pab-Mir-17-P2c  Pbv-Mir-17-P2c  Rno-Mir-17-P2c  Sha-Mir-17-P2c  Spt-Mir-17-P2c  Sto-Mir-17-P2c  Tgu-Mir-17-P2c  Xla-Mir-17-P2c3  Xla-Mir-17-P2c4  Xtr-Mir-17-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015272222.1: 295-359 [+]
Seed AAGGUGC
Precursor
(pre-Mir +30nt flank)		 
UAAGGUGCAUCUAGUGCAGUUAGUGAAGUAGCUUAGAAUCUACUGCCCUGAAUGCUCCUUCUGGC
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Structure
            10        20        30 
U----|   U    C   U     UA  GAAGUA 
     AAGG GCAU UAG GCAGU  GU      \
     UUCC CGUA GUC CGUCA  UA      G
CGGUC^   U    A   C     UC  AGAUUC 
    60        50        40
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Gja-Mir-17-P2c_5p
mirBase accessionNone
Sequence 
0- UAAGGUGCAUCUAGUGCAGUUAG -23
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Star sequence

Gja-Mir-17-P2c_3p*
mirBase accessionNone
Sequence 
40- UACUGCCCUGAAUGCUCCUUCUGGC -65
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