Mir-19-P2a1

MirGeneDB ID

Mal-Mir-19-P2a1

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-19-P1a2 Mal-Mir-19-P2a2 Mal-Mir-19-P2d

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Hsa-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Ocu-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Xtr-Mir-19-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884692.1: 2412480-2412541 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUGGCUUGUCUGCUAAUUGUCACUUGGUCAGUUUUGCUGGUUUGCAUUCCGCUUUAACUGAUGUUUGCUGUGCAAAUCCAUGCAAAACUGACUAGGUUGAUGAAAUGUUCUGCAAGGUUUU

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Structure

        10         20         30         40         50        60
UCUGGCUUGUCUGCUAA- UG  -                -   -|      UCC  UUUAAC 
                  U  UC ACUUGGUCAGUUUUGC UGG UUUGCAU   GC      U
                  A  AG UGGAUCAGUCAAAACG ACC AAACGUG   CG      G
UUUUGGAACGUCUUGUAA GU  U                U   U^      U--  UUUGUA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-19-P2a1_5p*

mirBase accession

None

Sequence

0- AGUUUUGCUGGUUUGCAUUCCGC -23

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Mature sequence

Mal-Mir-19-P2a1_3p

mirBase accession

None

Sequence

39- UGUGCAAAUCCAUGCAAAACUGA -62

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