MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-19-P2a1

Family name MIR-19 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-19b-2
Paralogues Gmo-Mir-19-P1a1  Gmo-Mir-19-P1a2  Gmo-Mir-19-P2a2  Gmo-Mir-19-P2c  Gmo-Mir-19-P2d 
Orthologues Aca-Mir-19-P2a  Ami-Mir-19-P2a  Bta-Mir-19-P2a  Cfa-Mir-19-P2a  Cja-Mir-19-P2a  Cli-Mir-19-P2a  Cmi-Mir-19-P2a  Cpi-Mir-19-P2a  Cpo-Mir-19-P2a  Dno-Mir-19-P2a  Dre-Mir-19-P2a1  Eca-Mir-19-P2a  Ete-Mir-19-P2a  Gga-Mir-19-P2a  Gja-Mir-19-P2a  Hsa-Mir-19-P2a  Laf-Mir-19-P2a  Lch-Mir-19-P2a  Loc-Mir-19-P2a  Mal-Mir-19-P2a1  Mdo-Mir-19-P2a  Mml-Mir-19-P2a  Mmr-Mir-19-P2a  Mmu-Mir-19-P2a  Mun-Mir-19-P2a  Ocu-Mir-19-P2a  Pab-Mir-19-P2a  Pbv-Mir-19-P2a  Rno-Mir-19-P2a  Sha-Mir-19-P2a  Spt-Mir-19-P2a  Sto-Mir-19-P2a  Tgu-Mir-19-P2a  Tni-Mir-19-P2a1  Xtr-Mir-19-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_520: 24765-24825 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2a1)		 Mir-17-P1a1 GeneScaffold_520: 24224-24283 [+] UCSC Ensembl
Mir-17-P2a1 GeneScaffold_520: 24343-24407 [+] UCSC Ensembl
Mir-19-P1a1 GeneScaffold_520: 24486-24543 [+] UCSC Ensembl
Mir-17-P4a1 GeneScaffold_520: 24648-24707 [+] UCSC Ensembl
Mir-19-P2a1 GeneScaffold_520: 24765-24825 [+] UCSC Ensembl
Seed GUGCAAA
Precursor
(pre-Mir +30nt flank)		 
UGCCGCCGGGAGAACUUCGCUACUCUGCUCAGUUUUGCUGGUUUGCAUUCCGCUGGAGAUUGCGUUGGUGUGCAAAUCCAUGCAAAACUGAGCAGGUUGGAGGUGUCCAGCUAAAUAACUU
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Structure
        10          20        30         40         50         
UGCCGCCGGGAGAACUU-- G   CU              -   -|      U  GCUGGAG 
                   C CUA  CUGCUCAGUUUUGC UGG UUUGCAU CC       \
                   G GGU  GACGAGUCAAAACG ACC AAACGUG GG       A
UUCAAUAAAUCGACCUGUG A   UG              U   U^      U  UUGCGUU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-19-P2a1_5p*
mirBase accessionMIMAT0044305
Sequence 
0- AGUUUUGCUGGUUUGCAUUCC -21
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Mature sequence

Gmo-Mir-19-P2a1_3p
mirBase accessionMIMAT0044306
Sequence 
38- UGUGCAAAUCCAUGCAAAACUGA -61
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