Mir-19-P2a

MirGeneDB ID

Cmi-Mir-19-P2a

Family name

MIR-19 (all species)

Seed

GUGCAAA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-19-P1a-v1 Cmi-Mir-19-P1a-v2 Cmi-Mir-19-P1c Cmi-Mir-19-P2b Cmi-Mir-19-P2c Cmi-Mir-19-P2d

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cli-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pbv-Mir-19-P2a Rno-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635908.1: 307499-307558 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUAUUUGGUAGAUAAAAACUUCUCUAGUUAGUUUUGCAGGGUUGCAUCCAGCUGUUACAGAUUUGCUGUGCAAAUCCAUGCAAAACUGACUAUGGUGGUGAAGAUGCAACAGGUGUCUA

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Structure

        10          20        30         40         50         
UUUAUUUGGUAGAUAAAA--   U  C              -   -|    UC    UGUUA 
                    ACU CU UAGUUAGUUUUGCA GGG UUGCA  CAGC     C
                    UGG GG AUCAGUCAAAACGU CCU AACGU  GUCG     A
AUCUGUGGACAACGUAGAAG   U  U              A   A^    --    UUUAG 
.       110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-19-P2a_5p*

mirBase accession

None

Sequence

0- AGUUUUGCAGGGUUGCAUCCAGC -23

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Mature sequence

Cmi-Mir-19-P2a_3p

mirBase accession

None

Sequence

37- UGUGCAAAUCCAUGCAAAACUGA -60

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