Mir-19-P2a

MirGeneDB ID

Rno-Mir-19-P2a

Family name

MIR-19 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-19b-1

Paralogues

Rno-Mir-19-P1a Rno-Mir-19-P2c

Orthologues

Aca-Mir-19-P2a Ami-Mir-19-P2a Bta-Mir-19-P2a Cfa-Mir-19-P2a Cja-Mir-19-P2a Cli-Mir-19-P2a Cmi-Mir-19-P2a Cpi-Mir-19-P2a Cpo-Mir-19-P2a Dno-Mir-19-P2a Dre-Mir-19-P2a1 Dre-Mir-19-P2a2 Eca-Mir-19-P2a Ete-Mir-19-P2a Gga-Mir-19-P2a Gja-Mir-19-P2a Gmo-Mir-19-P2a1 Gmo-Mir-19-P2a2 Hsa-Mir-19-P2a Laf-Mir-19-P2a Lch-Mir-19-P2a Loc-Mir-19-P2a Mal-Mir-19-P2a1 Mal-Mir-19-P2a2 Mdo-Mir-19-P2a Mml-Mir-19-P2a Mmr-Mir-19-P2a Mmu-Mir-19-P2a Mun-Mir-19-P2a Oan-Mir-19-P2a5 Oan-Mir-19-P2a6 Ocu-Mir-19-P2a Pab-Mir-19-P2a Pbv-Mir-19-P2a Sha-Mir-19-P2a Spt-Mir-19-P2a Sto-Mir-19-P2a Tgu-Mir-19-P2a Tni-Mir-19-P2a1 Tni-Mir-19-P2a2 Xla-Mir-19-P2a3 Xla-Mir-19-P2a4 Xtr-Mir-19-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr15: 100180479-100180539 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-19-P2a)

Mir-17-P1a chr15: 100179892-100179951 [+] UCSC Ensembl
Mir-17-P2a chr15: 100180031-100180095 [+] UCSC Ensembl
Mir-19-P1a chr15: 100180175-100180232 [+] UCSC Ensembl
Mir-17-P4a chr15: 100180349-100180407 [+] UCSC Ensembl
Mir-19-P2a chr15: 100180479-100180539 [+] UCSC Ensembl
Mir-92-P1a chr15: 100180596-100180654 [+] UCSC Ensembl

Seed

GUGCAAA

Precursor
(pre-Mir +30nt flank)

ACUGUCCGUACUGAGCACUGGUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUGUAUAAUAUUCUGCUGUGCAAAUCCAUGCAAAACUGACUGUGGUGGUGAAAAGUCUGUAGAGACGUA

Get precursor sequence

Structure

        10        20          30         40         50          
ACUGUCCGUACUGAGCACUGGU--                 -  -|     UC    UGUAUA 
                        CUAUGGUUAGUUUUGCA GG UUUGCA  CAGC      \
                        GGUGUCAGUCAAAACGU CC AAACGU  GUCG      A
AUGCAGAGAUGUCUGAAAAGUGGU                 A  U^     --    UCUUAU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-19-P2a_5p*

mirBase accession

MIMAT0017096

Sequence

0- AGUUUUGCAGGUUUGCAUCCAGC -23

Get sequence

Proposed targets

TargetScanVert: rno-miR-19b-1-5p
miRDB: MIMAT0017096

Mature sequence

Rno-Mir-19-P2a_3p

mirBase accession

MIMAT0000788

Sequence

38- UGUGCAAAUCCAUGCAAAACUGA -61

Get sequence

Proposed targets

microrna.org: MIMAT0000788
TargetScanVert: rno-miR-19b-3p
miRDB: MIMAT0000788